Update Java, Maven and Libraries

Updated to Java 17. Updated Maven and various libraries. Cleaned up unnecessary code and pom entries. Removed dependency on gl.jar. Switched from Travis to CircleCI.

Enhanced CWD handling

Added handling for CIWD 3.0, and also reduced CWD reporting to protein level to reduce the 'noise' in summary.xml.

Service Enabled

Service enabled the Immunogenetic Data Tools. Command line tools remain. Fixed some runtime exceptions.

Improved ARS Logic

Implemented NMDP "g" handling of renamed allele HLA-C*02:10. Ensured aggregation into "g" group when multiple "G" groups are associated with the same "P" level allele.

v0.8.5_3

Allow for note to be provided as the third argument on input.

v0.8.5_2

Improved xml output, including inclusion of warnings. Re-enabled some tests. Fixed hard coded homozygous logic when haplotypes explicitly provided.

v0.8.5_1

Turn off CWD logic if no HLA DB specified. Re-format XML output. Now handling (and decoding) NMDP allele codes.

v0.8.5

Fixed CWD logic - now making use of IMGT files automatically. Repaired linkage reporting output and now expressing as a haplotype. Ensured xml header does not appear multiple times in a single summary.

v0.8.4

Publishing an actual release on the local repository to aid in utilization of command line tools. Support for HML and automatic download of HLA DB files incorporated. Some performance gains.