Merge pull request #25 from ajmaurais/dia_qc_bug_fix #71
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| name: Nextflow Stub Runs | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ '**' ] | |
| jobs: | |
| stub-run: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| config: [ | |
| 'test-diann.config', | |
| 'test-encyclopedia-narrow-gpf.config', | |
| 'test-encyclopedia-wide-only.config', | |
| 'test-diann-pdc.config', | |
| 'test-msconvert-only-pdc.config', | |
| 'test-msconvert-only-local.config' | |
| ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Run (${{ matrix.config }}) | |
| run: | | |
| echo "Installing Nextflow:" | |
| export NXF_VER=24.04.4 # Specify nextflow version. Currently there is a bug in 24.10.0 | |
| curl -s https://get.nextflow.io | bash | |
| chmod +x nextflow | |
| echo "Running Nextflow stub with config: ${{ matrix.config }}" | |
| ./nextflow run . -stub-run -c test-resources/${{ matrix.config }} |