From 28174b934d152cdf345b3a7bdf270867b52c3511 Mon Sep 17 00:00:00 2001
From: mauraisa <mauraisa@uw.edu>
Date: Mon, 9 Sep 2024 14:03:46 -0700
Subject: [PATCH] Create run_details_file before it needs to be uploaded.

---
 main.nf | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

diff --git a/main.nf b/main.nf
index 210d26c..7164e81 100644
--- a/main.nf
+++ b/main.nf
@@ -112,6 +112,12 @@ workflow {
             all_mzml_ch = wide_mzml_ch
         }
 
+        // save details about this run
+        input_files = all_mzml_ch.map{ it -> ['Spectra File', it.baseName] }
+        version_files = Channel.empty()
+        save_run_details(input_files.collect(), version_files.collect())
+        run_details_file = save_run_details.out.run_details
+
         // if requested, upload mzMLs to panorama
         if(params.panorama.upload) {
 
@@ -124,13 +130,6 @@ workflow {
             )
         }
 
-
-        // save details about this run
-        input_files = all_mzml_ch.map{ it -> ['Spectra File', it.baseName] }
-        version_files = Channel.empty()
-        save_run_details(input_files.collect(), version_files.collect())
-        run_details_file = save_run_details.out.run_details
-
         return
     }