Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for mzMLs on Panorama #21

Merged
merged 3 commits into from
Sep 20, 2024
Merged

Conversation

ajmaurais
Copy link
Contributor

  • Rewrite get_mzmls sub-workflow to handle mzML files stored on Panorama
  • All MS data files must have the same extension, but MS files can be retrieved from more than one directory.
  • Add panorama.domain parameter to check for Panoramaness.

- Add support for mzML files stored on panorama.
- Use list_params function to process spectra_dir parameter.
- Rename all panorama procecies with text GET_RAW -> GET_MS
- Rename output parameter of PANORAMA_GET_MS_FILE_LIST
  raw_files -> ms_files
@mriffle mriffle merged commit 5f7ed38 into mriffle:main Sep 20, 2024
6 checks passed
@ajmaurais ajmaurais deleted the panorama_mzml branch September 20, 2024 20:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants