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<!DOCTYPE html>
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Find answers to frequently asked questions about SRTI's variant browser
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<label>How should I cite discoveries made using SRTI's browser?</label>
<p><a href="http://www.cell.com/cell/fulltext/S0092-8674(16)30278-1"> Whole Genome Sequencing of a Healthy Aging Cohort (2016) Cell, Volume 165, Issue 4,1002-1011.</a> DOI: http://dx.doi.org/10.1016/j.cell.2016.03.022 </p>
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<label>Who do I contact if I've found a bug or if the server is down?</label>
<p> Bugs can be reported via <a href="https://github.com/mrueda/SRTI-Variant-Browser/issues">Github</A> or by <a href="mailto:genomics@scripps.edu">email</a>.</p>
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<label>What genome build is the SRTI data based on?</label>
<p>All data are based on GRCh37/hg19.</p>
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<label>Are the positions 0-based or 1-based</label>
<p>1-based.</br>
You'll need 0-based to search in the GA4GH form (sorry!)</p>
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<label>What cohorts are represented in the SRTI data?</label>
<p>The <strong>Wellderly</strong> cohort (filtered as 95% european): We provide aggregate data for 511 individuals sequenced with Complete Genomics (those in the Cell paper), and aggregate data for 163 individuals sequenced with Illumina platform (unpublished data).<br />
The <strong>Molecular Autopsy</strong> cohort: We provide aggregate data for 50 individuals who suffered sudden death.</p>
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<label>What does N/N mean?</label>
<p>Number of Genotypes with half-call or no-call.</p>
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<label>Can I download the data?</label>
<p>Absolutely. You can download Wellderly aggregate data from <a href="http://10.40.129.44:81/files/wellderly/vcf/">here</a> and Molecular Autopsy from <a href="http://10.40.129.44:81/files/molau/vcf/">here</a>.</p>
</section>
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<label>Can I download individual-level data?</label>
<p>For the Wellderly cohort, individual-level variant data are available from Complete Genomics under terms determined by Complete Genomics or from Scripps Genomic Medicine for scientific collaboration with not-for profit entities (via Material Transfer Agreement), and will be deposited in dbGAP under similar data use restrictions. Contact us at genomics@scripps.edu for more info.</p>
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<p>Yes we do. Take a look to the section "Data download" <a href="page-help.html">here</a>.</p>
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<label>When I search by rsid sometimes I get more than one entry, why is that?</label>
<p>If the rsid appears in multiple genes, the search will get one entry per gene.</p>
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