Updating cores and mem #282

	name: Pack CWL Files

	# Triggers the action on push or pull requests,
	# but only for the develop branch
	on:
	push:
	branches: [ develop ]
	pull_request:
	branches: [ develop ]

	jobs:
	pack_cwls:
	runs-on: macos-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: [3.8.x, 3.9.x]
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install cwltool
	run: \|
	python -m pip install toil[cwl]==5.7.1
	- name: Run cwltool --pack for all workflows
	run: \|
	echo Removing old packed workflows
	rm -rf ./packed_workflows/*
	echo Packing CWL files...
	find . -name '.cwl' ! -path '__packed' ! -path '/command_line_tools/*' -type f -print0 -exec sh -c 'cwltool --pack $0 > ${0/.cwl/__packed.cwl}' {} \;
	- name: Validate packed workflows
	run: \|
	echo Validating packed workflows...
	find . -name '*__packed.cwl' \| xargs -I file cwltool --debug --validate file
	- uses: EndBug/add-and-commit@v9.1.4
	with:
	ref: ${{ github.head_ref }}
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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