- Updated docs for
neurobase
- Pushing back to CRAN after
neurobase
is back on.
- Moved
orient_rpi*
functionality toneurobase
rather thanfslr
due to dependencies. - Added
fsl_std_file
.
- Added
rpi*
functionality that usesRNifti
and is likely what we'd want to use.
- Fixes bug with
getForms
(and therefore a lot of stuff) with FSL version 6.0 and greater.
- Added
quickshear_deface_image
to remove faces based on the QuickShear method andnipy/quickshear
. - Added
mridefacer
to add to the anonymization pipelines. - Added
invert_xfm
and otherconvert_xfm
functionality. - Added
fslreorient2std_mat
to get the matrix output fromfslreorient2std
.
- Added
face_removal_mask
for removal of faces, based onpydeface
. - Fixed
fslsmooth
to return an output file ifretimg = FALSE
.
- fixed bug in
reverse_rpi_orient_file
that was causingERROR: Could not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected operator
error. - added
topup
to the exports. - added
fsl_resample
. - Added
fsl_cluster
. Removedcluster
from exports due to conflicts. - added
read_xfm
for reading transformations. - Fixes
mid_sagittal_align
for flipping. - Removed
matrixStats
as unnecessary dependency.
- Added functionality of
topup
and other DTI-based tools. - Tried to get
susan
to work properly. - Need to incorporate
fsleyes
in the future release.
- Changed default reading/writing to
readnii
/writenii
-
Added
readnii
andwritenii
-
Added
ortho_diff
-
Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
-
Fixed fsl_biascorrect.