-
Notifications
You must be signed in to change notification settings - Fork 6
/
features.html
627 lines (582 loc) · 25.8 KB
/
features.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
<!DOCTYPE html>
<html>
<head>
<!-- Basic -->
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>MZmine 2 - Features</title>
<meta name="description" content="MZmine 2 is an open-source software for mass spectrometry data processing.">
<!-- Chrome, Firefox OS and Opera -->
<meta name="theme-color" content="#0088cc">
<!-- Windows Phone -->
<meta name="msapplication-navbutton-color" content="#0088cc">
<!-- iOS Safari -->
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<!-- Mobile Metas -->
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="shortcut icon" href="favicon.ico" />
<!-- Web Fonts -->
<link href="http://fonts.googleapis.com/css?family=Open+Sans:300,400,600,700,800%7CShadows+Into+Light" rel="stylesheet" type="text/css">
<!-- Vendor CSS -->
<link rel="stylesheet" href="vendor/bootstrap/bootstrap.css" />
<link rel="stylesheet" href="vendor/fontawesome/css/font-awesome.css" />
<link rel="stylesheet" href="vendor/owlcarousel/owl.carousel.min.css" media="screen">
<link rel="stylesheet" href="vendor/owlcarousel/owl.theme.default.min.css" media="screen">
<link rel="stylesheet" href="vendor/magnific-popup/magnific-popup.css" media="screen">
<!-- Theme CSS -->
<link rel="stylesheet" href="css/theme.css" />
<link rel="stylesheet" href="css/theme-elements.css">
<link rel="stylesheet" href="css/theme-animate.css" />
<!-- Skin CSS -->
<link rel="stylesheet" href="css/skins/default.css" />
<!-- Theme Custom CSS -->
<link rel="stylesheet" href="css/custom.css">
<!--[if IE]>
<link rel="stylesheet" href="css/ie.css">
<![endif]-->
<!--[if lte IE 8]>
<script src="vendor/respond/respond.js"></script>
<script src="vendor/excanvas/excanvas.js"></script>
<![endif]-->
</head>
<body>
<div class="body">
<header id="header">
<div class="container">
<h1 class="logo">
<a href="/">
<img alt="QC" width="427" height="99" class="logo-normal" data-sticky-width="237" data-sticky-height="55" src="img/logo.png">
<img alt="QC" width="237" height="55" class="logo-sticky" src="img/logo.png">
</a>
</h1>
<button class="btn btn-responsive-nav btn-inverse" data-toggle="collapse" data-target=".nav-main-collapse">
<i class="fa fa-bars"></i>
</button>
</div>
<div class="navbar-collapse nav-main-collapse collapse">
<div class="container">
<nav class="nav-main mega-menu">
<ul class="nav nav-pills nav-main" id="mainMenu">
<li>
<a href="/">Home</a>
</li>
<li class="dropdown active mega-menu-item mega-menu-fullwidth">
<a class="dropdown-toggle" href="features.html">
Features
<i class="fa fa-angle-down"></i>
</a>
<ul class="dropdown-menu">
<li>
<div class="mega-menu-content">
<div class="row">
<div class="col-md-3">
<ul class="sub-menu">
<li>
<span class="mega-menu-sub-title">General Features</span>
<ul class="sub-menu">
<li><a href="features.html#FileFormats">Raw data file formats</a></li>
<li><a href="features.html#ImportExport">Import and Export</a></li>
<li><a href="features.html#Batch">Batch Processing</a></li>
</ul>
<br/>
<span class="mega-menu-sub-title">Raw Data Methods</span>
<ul class="sub-menu">
<li><a href="features.html#RawFiltering">Filtering & Smoothing</a></li>
<li><a href="features.html#RawDetection">Peak Detection</a></li>
</ul>
</li>
</ul>
</div>
<div class="col-md-3">
<ul class="sub-menu">
<li>
<span class="mega-menu-sub-title">Peak List Methods</span>
<ul class="sub-menu">
<li><a href="features.html#GapFilling">Gap Filling</a></li>
<li><a href="features.html#Isotopes">Isotope Detection</a></li>
<li><a href="features.html#Filtering">Filtering</a></li>
<li><a href="features.html#Alignment">Alignment</a></li>
<li><a href="features.html#Normalization">Normalization</a></li>
<li><a href="features.html#Identification">Identification</a></li>
</ul>
</li>
</ul>
</div>
<div class="col-md-3">
<ul class="sub-menu">
<li>
<span class="mega-menu-sub-title">Statistical Analysis</span>
<ul class="sub-menu">
<li><a href="features.html#CV">CV Plot</a></li>
<li><a href="features.html#Logratio">Logratio Analysis</a></li>
<li><a href="features.html#PCA">Principal Component Analysis (PCA)</a></li>
<li><a href="features.html#CDA">Curvilinear Distant Analysis (CDA)</a></li>
<li><a href="features.html#SammonsProjection">Sammon's Projection</a></li>
<li><a href="features.html#Clustering">Clustering</a></li>
<li><a href="features.html#Heatmap">Heat Map Plot</a></li>
</ul>
</li>
</ul>
</div>
<div class="col-md-3">
<ul class="sub-menu">
<li>
<span class="mega-menu-sub-title">Visualization</span>
<ul class="sub-menu">
<li><a href="features.html#TIC_XIC">TIC/XIC Visualizer</a></li>
<li><a href="features.html#Spectra">Spectra Visualizer</a></li>
<li><a href="features.html#IDA">IDA Visualizer</a></li>
<li><a href="features.html#2D">2D Visualizer</a></li>
<li><a href="features.html#3D">3D Visualizer</a></li>
<li><a href="features.html#NeutralLoss">Neutral Loss Visualizer</a></li>
<li><a href="features.html#Scatter">Scatter Plot</a></li>
<li><a href="features.html#Histogram">Histogram Plot</a></li>
<li><a href="features.html#PeakIntensity">Peak Intensity Plot</a></li>
</ul>
</li>
</ul>
</div>
</div>
</div>
</li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" href="download.html">
Download
<i class="fa fa-angle-down"></i>
</a>
<ul class="dropdown-menu">
<li><a href="download.html">Download</a></li>
<li><a href="changelog.html">Changelog</a></li>
</ul>
</li>
<li>
<a href="development.html">Development</a>
</li>
<li class="dropdown">
<a class="dropdown-toggle" href="support.html">
Support
<i class="fa fa-angle-down"></i>
</a>
<ul class="dropdown-menu">
<li><a href="support.html">Support</a></li>
<li><a href="documentation_overview.html">Documentation</a></li>
<li><a href="support.html#Issues">Issues</a></li>
</ul>
</li>
<li>
<a href="contributors.html">Contributors</a>
</li>
</ul>
</nav>
</div>
</div>
</header>
<div role="main" class="main">
<section class="page-top">
<div class="container">
<div class="row">
<div class="col-md-12">
<h2>Features</h2>
</div>
</div>
</div>
</section>
<div class="container">
<h2>General <strong>Features</strong></h2>
<span class="anchor" id="FileFormats"></span>
<h4>Raw data file formats</h4>
MZmine 2 can read and process both unit mass resolution and exact mass resolution (e.g. FTMS) data in both continuous and centroided modes, including fragmentation (MSn) scans. Supported data formats are:<br/>
<ul>
<li><a href="http://www.psidev.info/mzml" target="_blank">mzML</a> (mzML versions 1.0 and 1.1)</li>
<li><a href="http://tools.proteomecenter.org/wiki/index.php?title=Formats:mzXML" target="_blank">mzXML</a> (mzXML versions 2.0 to 3.1) </li>
<li><a href="http://www.psidev.info/mzdata-1_0_5" target="_blank">mzData</a> (mzData versions 1.04 and 1.05)</li>
<li><a href="http://www.unidata.ucar.edu/software/netcdf/" target="_blank">NetCDF</a> (no MS<sup>n</sup> support)</li>
<li>Thermo RAW</li>
<li>Waters RAW</li>
</ul>
<br/>
<span class="anchor" id="ImportExport"></span>
<h4>Import and Export</h4>
In order to exchange data with other applications, the following import and export file formats are supported: <br/><br/>
<div class="col-md-3">
<strong>Import</strong>
<ul>
<li>CASMI challenge task</li>
<li>mzTab</li>
<li>XML</li>
</ul>
</div>
<div class="col-md-3">
<strong>Export</strong>
<ul>
<li>CSV</li>
<li>MetaboAnalyst</li>
<li>mzTab</li>
<li>SQL database</li>
<li>XML</li>
</ul>
</div>
<br clear="both" />
<span class="anchor" id="Batch"></span>
<h4>Batch Processing</h4>
MZmine 2 has the ability to run multiple data processing methods in batch mode using any of the methods available in MZmine. The batch mode can be run as a command-line application which makes it easy to integrate MZmine into automated data analysis workflows like QC systems.
<br/><br/><br/>
<h2>Raw Data <strong>Methods</strong></h2>
<span class="anchor" id="RawFiltering"></span>
<h4>Filtering & Smoothing</h4>
There are several filtering and smoothing modules available for e.g. baseline correction, scan smoothing or cropping of the data.
<div class="owl-carousel owl-carousel-spaced" data-plugin-options='{"items": 3, "dots": "false"}' id="imgGallery">
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/Baseline.png" title="Baseline Correction">
<img alt="" class="img-responsive" src="img/screenshots/Baseline_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Baseline Correction</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/ScanFiltering.png" title="Scan Filtering">
<img alt="" class="img-responsive" src="img/screenshots/ScanFiltering_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Scan Filtering</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
</div>
<br/>
<span class="anchor" id="RawDetection"></span>
<h4>Peak Detection</h4>
Peak detection is performed in a three-step manner: first, mass values are detected within each spectrum (several methods are available, depending on the nature of the data). In the second step, a chromatogram is constructed for each of the mass values which span over a certain time range. Finally, deconvolution algorithms are applied to each chromatogram to recognize the actual chromatographic peaks.<br/>
<div class="owl-carousel owl-carousel-spaced" data-plugin-options='{"items": 3, "dots": "false"}' id="imgGallery_2">
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/MassDetection.png" title="Mass Detection">
<img alt="" class="img-responsive" src="img/screenshots/MassDetection_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Mass Detection</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/ChromatogramDeconvolution.png" title="Peak Deconvolution">
<img alt="" class="img-responsive" src="img/screenshots/ChromatogramDeconvolution_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Deconvolution</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
</div>
<br/>
<span class="anchor" id="GapFilling"></span>
<span class="anchor" id="Isotopes"></span>
<span class="anchor" id="Filtering"></span>
<span class="anchor" id="Alignment"></span>
<span class="anchor" id="Normalization"></span>
<span class="anchor" id="Identification"></span>
<h2>Peak List <strong>Methods</strong></h2>
There are several modules for processing of peaks lists, including:<br/>
<div class="col-md-4">
<ul>
<li>Gap Filling</li>
<li>Isotope Detection</li>
<li>Filtering</li>
</ul>
</div>
<div class="col-md-4">
<ul>
<li>Alignment</li>
<li>Normalization</li>
<li>Identification</li>
</ul>
</div><br/>
<br clear="both" /><br/>
Identification of peaks can be performed by using any of the following:<br/>
<div class="col-md-4">
<ul>
<li>Custom database search</li>
<li>Online database search (see below)</li>
<li>Fragment or adduct search</li>
</ul>
</div>
<div class="col-md-4">
<ul>
<li><a href="http://www.ncbi.nlm.nih.gov/pubmed/22111785" target="_new">CAMERA</a></li>
<li><a href="http://chemdata.nist.gov/dokuwiki/doku.php?id=chemdata:ms-search" target="_blank">NIST MS Search</a></li>
<li>Various prediction tools</li>
</ul>
</div>
<br clear="both" /><br/>
Currently the following online databases are supported. Support for other databases may be implemented as additional plugins.
<div class="col-md-4">
<ul>
<li><a href="http://www.chemspider.com" target="_blank">ChemSpider</a></li>
<li><a href="http://www.hmdb.ca" target="_blank">HMDB</a></li>
<li><a href="http://www.genome.jp/kegg" target="_blank">KEGG</a></li>
<li><a href="http://www.lipidmaps.org" target="_blank">LipidMaps</a></li>
<li><a href="http://www.massbank.jp/?lang=en" target="_blank">MassBank</a></li>
</ul>
</div>
<div class="col-md-4">
<ul>
<li><a href="http://metlin.scripps.edu" target="_blank">METLIN</a></li>
<li><a href="http://plantcyc.org" target="_blank">PlantCyc</a></li>
<li><a href="http://pubchem.ncbi.nlm.nih.gov" target="_blank">PubChem</a></li>
<li><a href="http://www.ymdb.ca" target="_blank">YMDB</a></li>
</ul>
</div>
<br clear="both" />
<br/>
<span class="anchor" id="CV"></span>
<span class="anchor" id="Logratio"></span>
<span class="anchor" id="PCA"></span>
<span class="anchor" id="CDA"></span>
<span class="anchor" id="SammonProjection"></span>
<span class="anchor" id="Clustering"></span>
<span class="anchor" id="Heatmap"></span>
<h2>Statistical <strong>Analysis</strong></h2>
MZmine 2 contains basic methods for statistical analysis of processed data. Processed data can also easily be exported to third-party statistical software for advanced analysis.<br/>
<div class="col-md-4">
<ul>
<li>CV Plots</li>
<li><a href="https://en.wikipedia.org/wiki/Cluster_analysis" target="_blank">Cluster Analysis</a></li>
<li><a href="https://en.wikipedia.org/wiki/Nonlinear_dimensionality_reduction#Curvilinear_distance_analysis" target="_blank">Curvilinear Distant Analysis (CDA)</a></li>
<li>Logratio Plots</li>
</ul>
</div>
<div class="col-md-4">
<ul>
<li><a href="https://en.wikipedia.org/wiki/Heat_map" target="_blank">Heat Maps</li>
<li><a href="https://en.wikipedia.org/wiki/Principal_component_analysis" target="_blank">Principal Component Analysis (PCA)</a></li>
<li><a href="https://en.wikipedia.org/wiki/Sammon_mapping" target="_blank">Sammon's Projection</a></li>
</ul>
</div>
<br clear="both" />
<div class="col-md-12">
<div class="owl-carousel owl-carousel-spaced" data-plugin-options='{"items": 3, "dots": "false"}' id="imgGallery_3">
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/PCA.png" title="Principal Component Analysis - PCA">
<img alt="" class="img-responsive" src="img/screenshots/PCA_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">PCA Analysis</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/LogratioPlot.png" title="Logratio plot of two samples">
<img alt="" class="img-responsive" src="img/screenshots/LogratioPlot_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Logratio plot</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/Cluster.png" title="Hierachical Cluster">
<img alt="" class="img-responsive" src="img/screenshots/Cluster_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Clustering</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
</div>
</div>
<br/><br clear="both" />
<span class="anchor" id="TIC_XIC"></span>
<span class="anchor" id="Spectra"></span>
<span class="anchor" id="IDA"></span>
<span class="anchor" id="2D"></span>
<span class="anchor" id="3D"></span>
<span class="anchor" id="NeutralLoss"></span>
<span class="anchor" id="Scatter"></span>
<span class="anchor" id="Histogram"></span>
<span class="anchor" id="PeakIntensity"></span>
<h2>Data <strong>Visualization</strong></h2>
MZmine 2 can visualize your raw data together with peak picking and identification results. This is very useful for evaluating different peak detection methods and getting an overview of the data. Plots can be exported to vector graphics for high quality printing.
<div class="owl-carousel owl-carousel-spaced" data-plugin-options='{"items": 3, "dots": "false"}' id="imgGallery_4">
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/Chromatogram.png" title="Chromatogram plot">
<img alt="" class="img-responsive" src="img/screenshots/Chromatogram_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Chromatogram plot</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/IDA.png" title="IDA Visualizer">
<img alt="" class="img-responsive" src="img/screenshots/IDA_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">IDA Visualizer</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/3Dpeak.png" title="3D view of peak">
<img alt="" class="img-responsive" src="img/screenshots/3Dpeak_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">3D view of peak</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/Spectrum.png" title="Spectra Visualizer">
<img alt="" class="img-responsive" src="img/screenshots/Spectrum_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Spectra Visualizer</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/2D.png" title="2D plot of dataset">
<img alt="" class="img-responsive" src="img/screenshots/2D_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">2D plot of dataset</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/XIC.png" title="XIC Plot">
<img alt="" class="img-responsive" src="img/screenshots/XIC_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">XIC Plot</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/Histogram.png" title="Histogram">
<img alt="" class="img-responsive" src="img/screenshots/Histogram_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Histogram</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
<div>
<div class="portfolio-item img-thumbnail">
<a class="thumb-info" href="img/screenshots/3D.png" title="3D view of dataset">
<img alt="" class="img-responsive" src="img/screenshots/3D_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">3D view of dataset</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/IntensityPlot.png" title="Intensity Plot">
<img alt="" class="img-responsive" src="img/screenshots/IntensityPlot_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Intensity Plot</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
<br/>
<a class="thumb-info" href="img/screenshots/ScatterPlot.png" title="Scatter Plot">
<img alt="" class="img-responsive" src="img/screenshots/ScatterPlot_S.png">
<span class="thumb-info-title">
<span class="thumb-info-inner">Scatter Plot</span>
</span>
<span class="thumb-info-action">
<span title="Universal" class="thumb-info-action-icon"><i class="fa fa-search-plus"></i></span>
</span>
</a>
</div>
</div>
</div>
</div>
</div>
</div>
<footer class="short" id="footer">
<div class="footer-copyright">
<div class="container">
<div class="row">
<div class="col-md-12">
<p>© Copyright 2015. All Rights Reserved.</p>
</div>
</div>
</div>
</div>
</footer>
</div>
<!-- Vendor -->
<script src="vendor/jquery/jquery.js"></script>
<script src="vendor/bootstrap/bootstrap.js"></script>
<script src="vendor/common/common.js"></script>
<script src="vendor/owlcarousel/owl.carousel.js"></script>
<script src="vendor/magnific-popup/jquery.magnific-popup.js"></script>
<!-- Theme Base, Components and Settings -->
<script src="admin/assets/javascripts/theme.js"></script>
<!-- Theme Base, Components and Settings -->
<script src="js/theme.js"></script>
<!-- Theme Custom -->
<script src="js/custom.js"></script>
<!-- Theme Initialization Files -->
<script src="js/theme.init.js"></script>
<!-- Google Analytics -->
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-63013892-1']);
_gaq.push(['_trackPageview']);
(function() {
var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
</body>
</html>