Updated workflows

.github/workflows/docs.yml

@@ -3,26 +3,29 @@ on:
     push:
         branches:
             - main
+    pull_request:
+        branches:
+            - main
 jobs:
     deploy:
         runs-on: ubuntu-latest
+        permissions: 
+            contents: write
         steps:
             - uses: actions/checkout@v3
             - uses: actions/setup-python@v4
               with:
-                  python-version: 3.8
+                  python-version: "3.8"
             - name: Install dependencies
               run: |
                   python -m pip install --upgrade pip
                   pip install --user --no-cache-dir Cython
                   pip install --user -r requirements.txt
+                  pip install --user -r requirements_dev.txt
                   pip install .
-            - name: Discover typos with codespell
-              run: |
-                  pip install codespell
-                  codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/
+            - run: python -m pip install --upgrade pip
             - run: pip install -r requirements_docs.txt
             - run: mkdocs gh-deploy --force

.github/workflows/macos.yml

@@ -24,12 +24,6 @@ jobs:
             uses: actions/setup-python@v4
             with:
               python-version: ${{ matrix.python-version}}
-          - name: Install GDAL
-            run: |
-              brew install gdal
-          - name: Test GDAL installation
-            run: |
-              gdalinfo --version
           - name: Install dependencies
             run: |
                 python -m pip install --upgrade pip

.github/workflows/ubuntu.yml

@@ -27,21 +27,15 @@ jobs:
               uses: actions/setup-python@v4
               with:
                   python-version: ${{ matrix.config.py }}
-            - name: Install GDAL
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
-            - name: Test GDAL installation
-              run: |
-                  python -c "from osgeo import gdal"
-                  gdalinfo --version
             - name: Install dependencies
               run: |
+                  python -m pip install --upgrade pip
+                  pip install --user --no-cache-dir Cython
                   pip install --user -r requirements.txt
                   pip install --user -r requirements_dev.txt
                   pip install .
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/
+                  python -m pytest tests/
 

.github/workflows/windows.yml

@@ -7,9 +7,7 @@ on:
             - main
 
 name: Windows build
-# jobs:
-#     test-windows:
-#         runs-on: windows-latest
+
 jobs:
     test-windows:
         runs-on: ${{ matrix.os }}
@@ -28,36 +26,9 @@ jobs:
             with:
               auto-activate-base: true
               python-version: ${{ matrix.python-version}}
-          - name: Install GDAL
-            run: |
-              conda install -c conda-forge gdal --yes
-          - name: Test GDAL installation
-            run: |
-              python -c "from osgeo import gdal"
-              gdalinfo --version
           - name: Install dependencies
             run: |
                 python -m pip install --upgrade pip
                 pip install --no-cache-dir Cython
                 pip install -r requirements.txt
-                pip install .
-
-        # steps:
-        #     - uses: actions/checkout@v3
-        #     - name: Install miniconda
-        #       uses: conda-incubator/setup-miniconda@v2
-        #       with:
-        #           auto-activate-base: true
-        #           python-version: "3.8"
-        #     - name: Install GDAL
-        #       run: conda install -c conda-forge gdal --yes
-        #     - name: Test GDAL installation
-        #       run: |
-        #           python -c "from osgeo import gdal"
-        #           gdalinfo --version
-        #     - name: Install dependencies
-        #       run: |
-        #           python -m pip install --upgrade pip
-        #           pip install --no-cache-dir Cython
-        #           pip install -r requirements.txt
-        #           pip install .
+                pip install .

mkdocs.yml

@@ -81,6 +81,5 @@ nav:
     - Report Issues: https://github.com/naotoo1/prosemble/issues
     - Examples:
         - examples/intro.ipynb
-    - API Reference:
-          - prosemble module: prosemble.md
-          - common module: common.md
+    # - API Reference:
+    #       - prosemble module: prosemble.md

requirements_dev.txt

@@ -9,4 +9,5 @@ tox
 coverage
 Sphinx
 twine
-
+autopep8==2.0.2
+pytest==7.0.1