README.md

ABoVE-Shrubs Pytorch Project

The main objective of this work is to test different foundation model programs for the modeling of canopy heights and land cover segmentation.

Getting Started

1. SSH to ADAPT Login

ssh adaptlogin.nccs.nasa.gov

2. SSH to GPU Login

ssh gpulogin1

3. Clone above-shrubs repository

Clone the github

git clone https://github.com/nasa-nccs-hpda/above-shrubs.pytorch

Dependencies

singularity build --sandbox above-shrubs.pytorch docker://nasanccs/above-shrubs.pytorch:latest

Setup step

In this step we select the data from a pool of GeoTIFFs and convert them to NumPy files for faster training and easier storage.

singularity exec --env PYTHONPATH="/explore/nobackup/people/jacaraba/development/above-shrubs.pytorch" --nv -B $NOBACKUP,/explore/nobackup/people,/explore/nobackup/projects /lscratch/jacaraba/container/above-shrubs.pytorch python /explore/nobackup/people/jacaraba/development/above-shrubs.pytorch/above_shrubs/view/chm_pipeline_cli.py --config-file /explore/nobackup/people/jacaraba/development/above-shrubs.pytorch/projects/chm/configs/above_shrubs_chm.yaml --step setup

Authors

• Jordan Alexis Caraballo-Vega, jordan.a.caraballo-vega@nasa.gov
• Matthew Macander, mmacander@abrinc.com
• Paul M. Montesano, paul.m.montesano@nasa.gov