From c0fd110d33f405b9e8e9956618b0bdda4c04dd1b Mon Sep 17 00:00:00 2001 From: Rutger Vos Date: Fri, 16 Aug 2024 17:51:14 +0200 Subject: [PATCH] first skim2phylo check --- examples/BGE00001_00002_skim2phylo_cox1.tsv | 88 +++++++++++++++++++++ 1 file changed, 88 insertions(+) create mode 100644 examples/BGE00001_00002_skim2phylo_cox1.tsv diff --git a/examples/BGE00001_00002_skim2phylo_cox1.tsv b/examples/BGE00001_00002_skim2phylo_cox1.tsv new file mode 100644 index 0000000..bf121b2 --- /dev/null +++ b/examples/BGE00001_00002_skim2phylo_cox1.tsv @@ -0,0 +1,88 @@ +BSNHM166-24 524 Limnephilidae Limnephilidae Halesus tessellatus [] 0 True +BSNHM124-24 657 Psychomyiidae, Ecnomidae, Polycentropodidae Polycentropodidae Polycentropus mortoni [] 0 True +BSNHM101-24 657 Psychomyiidae Rhyacophilidae Rhyacophila meyeri [] 0 False +BSNHM019-24 657 Leptoceridae Leptoceridae Oecetis struckii [] 0 True +BSNHM118-24 199 Brachycentridae Brachycentridae Micrasema nigrum [] 0 False +BSNHM186-24 209 Drosophilidae, Beraeidae, Carabidae, Corydalidae, Chloropidae, Syrphidae Beraeidae Beraea aureomarginata [] 0 False +BSNHM140-24 656 Taeniopterygidae, Leuctridae, Elmidae Leuctridae Leuctra fraterna [] 0 True +BSNHM142-24 274 Nolidae, Elachistidae, Hydroptilidae, Euteliidae, Tineidae, Noctuidae, Sphingidae Hydroptilidae Hydroptila uncinata [9, 20, 58] 0 False +BSNHM047-24 657 Psychomyiidae Psychomyiidae Tinodes maroccanus [] 0 True +BSNHM150-24 656 Heptageniidae Heptageniidae Epeorus torrentium [] 0 True +BSNHM087-24 657 Hydropsychidae Hydropsychidae Diplectrona magna [] 0 True +BSNHM008-24 120 Limnephilidae Limnephilidae Annitella pyrenaea [] 0 False +BSNHM110-24 657 Leptoceridae Leptoceridae Adicella syriaca [] 0 True +BSNHM068-24 1 Limnephilidae Limnephilidae Colpotaulius incisus [] 0 False +BSNHM068-24 346 Limnephilidae Limnephilidae Colpotaulius incisus [] 0 False +BSNHM073-24 360 Goeridae Goeridae Silo graellsii [] 0 False +BSNHM088-24 657 Hydroptilidae, Nymphalidae Hydroptilidae Hydroptila uncinata [] 0 True +BSNHM131-24 361 Limnephilidae Limnephilidae Drusus destitutus [] 0 False +BSNHM108-24 656 Noctuidae, Rhyacophilidae, Muscidae Rhyacophilidae Rhyacophila hartigi [] 0 True +BSNHM168-24 221 Limnephilidae Limnephilidae Dicosmoecus palatus [35, 60] 0 False +BSNHM057-24 365 Philopotamidae Philopotamidae Philopotamus achemenus [] 0 False +BSNHM065-24 483 Staphylinidae Hydroptilidae Stactobia caspersi [46, 68, 75, 87, 94, 105, 115, 117] 0 False +BSNHM091-24 124 Limnephilidae Limnephilidae Annitella chomiacensis [] 0 False +BSNHM091-24 203 Limnephilidae, Phryganeidae Limnephilidae Annitella chomiacensis [] 0 False +BSNHM054-24 656 Leptoceridae Leptoceridae Athripsodes fulvoguttatus [] 0 True +BSNHM177-24 117 Limnephilidae Limnephilidae Colpotaulius incisus [] 0 False +BSNHM143-24 237 Limnephilidae Limnephilidae Drusus destitutus [] 0 False +BSNHM017-24 657 Lycaenidae, Hydroptilidae, Nymphalidae Hydroptilidae Oxyethira spinosella [] 0 True +BSNHM155-24 245 Limnephilidae Limnephilidae Halesus tessellatus [] 0 False +BSNHM027-24 657 Rhinophoridae, Hepialidae, Glossosomatidae, Noctuidae, Palaeosetidae Glossosomatidae Glossosoma capitatum [] 0 True +BSNHM034-24 294 Polycentropodidae Polycentropodidae Plectrocnemia praestans [] 0 False +BSNHM176-24 656 Nymphalidae, Hydroptilidae, Pieridae, Lycaenidae, Anaplasmataceae Hydroptilidae Stactobia mclachlani [] 0 True +BSNHM082-24 657 Psychomyiidae Psychomyiidae Tinodes algiricus [] 0 True +BSNHM056-24 35 Limnephilidae Limnephilidae Halesus tessellatus [] 0 False +BSNHM024-24 206 Rhyacophilidae Rhyacophilidae Rhyacophila rougemonti [] 0 False +BSNHM032-24 408 Limnephilidae Limnephilidae Drusus destitutus [] 0 False +BSNHM098-24 657 Lycaenidae, Nymphalidae, Crambidae Hydroptilidae Stactobia eatoniella [] 0 False +BSNHM115-24 654 Potamanthidae, Isonychiidae, Heptageniidae, Leptophlebiidae, Ephemeridae Leptophlebiidae Thraulus bellus [] 0 True +BSNHM152-24 38 Nemouridae, Taeniopterygidae, Leuctridae, Elmidae Leuctridae Leuctra signifera [] 0 False +BSNHM144-24 656 Papilionidae, Geometridae, Rhyacophilidae, Muscidae Rhyacophilidae Rhyacophila meyeri [] 0 True +BSNHM043-24 657 Leptoceridae Leptoceridae Triaenodes conspersus [] 0 True +BSNHM106-24 657 Conoesucidae, Nymphalidae, Beraeidae, Odontoceridae, Sericostomatidae, Palaeosetidae Beraeidae Beraeodina palpalis [] 0 True +BSNHM107-24 27 Leptoceridae Leptoceridae Athripsodes leucophaeus [] 0 False +BSNHM107-24 657 Leptoceridae Leptoceridae Athripsodes leucophaeus [] 0 True +BSNHM095-24 90 Erebidae, Noctuidae, Nymphalidae, Rhyacophilidae Rhyacophilidae Rhyacophila pallida [] 0 False +BSNHM095-24 50 Sarcophagidae, Nymphalidae, Hesperiidae, Rhyacophilidae, Culicidae, Syrphidae Rhyacophilidae Rhyacophila pallida [] 0 False +BSNHM042-24 161 Leptoceridae Leptoceridae Athripsodes cuneorum [] 0 False +BSNHM085-24 656 Goeridae, Uenoidae, Limnephilidae, Phryganeidae Goeridae Silo rufescens [] 0 True +BSNHM021-24 656 Limnephilidae Limnephilidae Potamophylax millenii [] 0 True +BSNHM136-24 324 Psychomyiidae Psychomyiidae Psychomyia ctenophora [] 0 False +BSNHM074-24 301 Goeridae, Brachycentridae, Phryganeidae, Crambidae Brachycentridae Micrasema togatum [58, 88, 95, 96] 0 False +BSNHM074-24 656 Brachycentridae, Limnephilidae, Lepidostomatidae, Goeridae, Uenoidae Brachycentridae Micrasema togatum [] 0 True +BSNHM181-24 146 Nymphalidae, Rhyacophilidae, Lycaenidae, Megalopygidae, Culicidae Rhyacophilidae Rhyacophila martynovi [] 0 False +BSNHM122-24 54 Leptoceridae Leptoceridae Leptocerus lusitanicus [5] 0 False +BSNHM122-24 498 Leptoceridae, Palaeosetidae Leptoceridae Leptocerus lusitanicus [] 0 False +BSNHM058-24 657 Ecnomidae, Psychomyiidae, Polycentropodidae Polycentropodidae Polycentropus divergens [] 0 True +BSNHM185-24 656 Nemouridae, Taeniopterygidae, Capniidae Taeniopterygidae Oemopteryx loewii [] 0 True +BSNHM062-24 656 Goeridae, Brachycentridae, Lepidostomatidae, Uenoidae Brachycentridae Micrasema nigrum [] 0 True +BSNHM111-24 352 Limnephilidae Limnephilidae Grammotaulius sibiricus [] 0 False +BSNHM141-24 656 Nemouridae Nemouridae Protonemura montana [] 0 True +BSNHM011-24 657 Psychomyiidae Psychomyiidae Tinodes cortensis [] 0 True +BSNHM104-24 439 Chloroperlidae Chloroperlidae Isoptena serricornis [] 0 False +BSNHM072-24 104 Sericostomatidae Sericostomatidae Sericostoma maclachlanianum [] 0 False +BSNHM039-24 657 Polleniidae, Leiodidae, Hepialidae, Glossosomatidae, Cylindrotomidae Glossosomatidae Glossosoma spoliatum [] 0 True +BSNHM070-24 657 Unknown Psychomyiidae Tinodes agaricinus [] 0 False +BSNHM126-24 657 Heptageniidae Heptageniidae Ecdyonurus forcipula [] 0 True +BSNHM003-24 657 Glossosomatidae, Palaeosetidae, Geometridae Glossosomatidae Agapetus iridipennis [] 0 True +BSNHM080-24 435 Limnephilidae Limnephilidae Limnephilus ponticus [] 0 False +BSNHM145-24 656 Hominidae Hydroptilidae Hydroptila acuta [] 0 False +BSNHM148-24 657 Psychomyiidae Psychomyiidae Tinodes cinereus [] 0 True +BSNHM061-24 299 Nymphalidae, Glossosomatidae, Noctuidae, Geometridae Glossosomatidae Agapetus caucasicus [] 0 False +BSNHM055-24 655 Limnephilidae Limnephilidae Acrophylax vernalis [] 0 True +BSNHM007-24 426 Leptoceridae Leptoceridae Erotesis melanella [3, 10, 14, 30, 33, 58, 71, 73, 77, 87, 89, 91, 99, 101] 0 False +BSNHM171-24 657 Geometridae, Gelechiidae, Glossosomatidae, Hepialidae Thremmatidae Thremma sardoum [] 0 False +BSNHM158-24 160 Limnephilidae Limnephilidae Micropterna malaspina [] 0 False +BSNHM158-24 19 Limnephilidae, Molannidae Limnephilidae Micropterna malaspina [] 0 False +BSNHM086-24 190 Geometridae, Nymphalidae, Glossosomatidae, Attevidae Glossosomatidae Agapetus cyrenensis [] 0 False +BSNHM086-24 657 Erebidae, Nymphalidae, Glossosomatidae, Rhyacophilidae Glossosomatidae Agapetus cyrenensis [] 0 True +BSNHM114-24 246 Carabidae, Hydrophilidae, Heptageniidae Heptageniidae Ecdyonurus bellieri [] 0 False +BSNHM123-24 656 Limnephilidae Limnephilidae Grammotaulius submaculatus [] 0 True +BSNHM102-24 61 Heptageniidae Heptageniidae Ecdyonurus austriacus [] 0 False +BSNHM102-24 182 Hydrophilidae, Siphlonuridae, Heptageniidae, Leptophlebiidae, Ephemerellidae Heptageniidae Ecdyonurus austriacus [] 0 False +BSNHM004-24 657 Hydropsychidae Hydropsychidae Diplectrona meridionalis [] 0 True +BSNHM134-24 657 Leptoceridae Leptoceridae Mystacides azurea [] 0 True +BSNHM059-24 657 Psychomyiidae Psychomyiidae Tinodes pollensa [] 0 True +BSNHM018-24 295 Nymphalidae, Limacodidae, Pieridae, Lycaenidae, Zygaenidae Hydroptilidae Stactobia mclachlani [] 0 False +BSNHM018-24 30 Lycidae, Membracidae, Hydraenidae Hydroptilidae Stactobia mclachlani [] 0 False +BSNHM172-24 657 Leptoceridae Heptageniidae Heptagenia coerulans [] 0 False