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rvosa committed Aug 14, 2024
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Example files for a run:
- [COI-5P.hmm](COI-5P.hmm) - a HMM profile for the COI-5P gene, used for alignment with `hmmer`
- [mge.fa](mge.fa) - an example FASTA file produced by MGE
- [mge.fa](mge.fa) - an example FASTA file produced by **MGE** provided by Dick Groenenberg (Naturalis)
- [BGE00001_00002_skim2phylo_cox1.fasta](BGE00001_00002_skim2phylo_cox1.fasta) - an example FASTA file produced by
**skim2phylo** provided by Ben Price (NHM)
- [cox1_concat_con.fasta](cox1_concat_con.fasta), [summary_stats.csv](summary_stats.csv) - an example FASTA file and
associated summary statistics, produced by **MGE** and provided by Dan Parsons (NHM)
- [input_Geneious_example.fasta](input_Geneious_example.fasta),
[output_Geneious_example.fasta](output_Geneious_example.fasta) - pre- and postprocessing files produced by the PacBio
amplicon barcoding workflow at UNIFI, provided by Giorgia Staffoni.
- [bold.xlsx](bold.xlsx) - spreadsheet produced by BOLD. Such a spreadsheet can be produced by:
1. logging in on [BOLD](boldsystems.org) with an account associated with the BGE project
2. navigating to the [BGE](https://boldsystems.org/index.php/MAS_Management_DataConsole?codes=BGE) project
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