galaxy-tool-BLAST

Wrapper for BLASTn; perform Blast searches and find the associated taxonomy.

Installation

Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-BLAST

Make the scripts executable:
chmod 755 galaxy-tool-BLAST/blastn.sh
chmod 755 galaxy-tool-BLAST/blastn_wrapper.py

Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-BLAST/blastn.xml" />

Depending on your setup the ansible.builtin.git module could be used.
Install the tool by including the following in your dedicated *.yml file:

- repo: https://github.com/naturalis/galaxy-tool-BLAST
file: blastn.xml
version: master

See the wiki for creation of reference databases.

Name		Name	Last commit message	Last commit date
Latest commit History 187 Commits
add_taxonomy_scripts		add_taxonomy_scripts
lite_version		lite_version
utilities		utilities
README.md		README.md
blastn.sh		blastn.sh
blastn.xml		blastn.xml
blastn_add_taxonomy.py		blastn_add_taxonomy.py
blastn_add_taxonomy_lite.py		blastn_add_taxonomy_lite.py
blastn_wrapper.py		blastn_wrapper.py
taxonomy_example_output_covfiltered.tabular		taxonomy_example_output_covfiltered.tabular
test_tool_form_utils.py		test_tool_form_utils.py