Galaxy wrapper for sickle paired-end trimming, input is a zip file
Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-sickle-pe
Make the python script executable:
chmod 755 galaxy-tool-sickle-pe/sickle.sh
chmod 755 galaxy-tool-sickle-pe/sickle_wrapper.py
Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-sickle-pe/sickle.xml" />
Depending on your setup the ansible.builtin.git module could be used.
Install the tool
by including the following in your dedicated *.yml file:
- repo: https://github.com/naturalis/galaxy-tool-sickle-pe
file: sickle.xml
version: master