Dockerfile.node2vec

# Use a lighter base image
FROM python:3.9

# Set the working directory in the container
WORKDIR /app

# Install GDAL dependencies
RUN apt-get update && apt-get install -y \
    libgdal-dev \
    && rm -rf /var/lib/apt/lists/*

# Set environment variables for GDAL
ENV CPLUS_INCLUDE_PATH=/usr/include/gdal
ENV C_INCLUDE_PATH=/usr/include/gdal

# Install Python dependencies
COPY requirements.txt /app/
RUN pip install --no-cache-dir -r requirements.txt

# Copy necessary files
COPY node2vec/Preprocessing/edgelist.py node2vec/Preprocessing/realadjmatrix.py node2vec/main/main.py node2vec/main/admatrix.py Cseq_Predicted_subset Test_dataset_synadjmatrix_subset merge_files_for_results.py  /app/

# Use a non-root user
RUN useradd -m myuser
USER myuser

# Command to run the Python script
CMD python node2vec/Preprocessing/edgelist.py && python node2vec/Preprocessing/realadjmatrix.py && python node2vec/main/main.py && python node2vec/main/admatrix.py && python merge_files_for_results.py && python