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faster clustering of DNA sequences #11

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seanrjohnson opened this issue Apr 21, 2024 · 0 comments
Open

faster clustering of DNA sequences #11

seanrjohnson opened this issue Apr 21, 2024 · 0 comments
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enhancement New feature or request

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@seanrjohnson
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deduplicate_genbank.py is really slow on nucleotide sequences, relying on cd-hit for clustering. There are probably faster ways to cluster nucleotide sequences that we should look into integrating.
@seanrjohnson seanrjohnson added the enhancement New feature or request label Apr 21, 2024
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