Documentation pull #193
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Documentation pull #193
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Fix swap of R & B channels in video formats supported by cv2
* Clear neural_widgets list on loadTrial * Create pose plugin for SLEAP (#1) * Create pose plugin for SLEAP * Tested thoroughly on both analysis files containing edges and not containing edges * May experience slow down on large files due to for-loops used in loading -> to be dealt with later * Lint * First revision SLEAP pose plugin (#2) * Add arguments to local function for clarity * Development checkpoint #1 * Development checkpoint #2: pose display can work * Refactor VideoScene into abstract base class * Development checkpoint #4: refactor out timeSource * Development checkpoint #5: bug fixes * Development checkpoint #6: attempt to fix crash Plus some cleanup * Development checkpoint #7: fix time update loop * Development checkpoint #8 Try again to fix shutdown warning * Try using pixmap-mode display for all but first native video file * Variable naming in DLC plugin * Bug fixes involving a little refactoring of seqIo and mp4Io * specify start time for each data format * Fix vertical scaling of neural view * Fix bug in resizeEvent behavior * fixed visibility of last trace in neural view * fixed scaling when neural traces are less * Fix bug to call rather than reference currentTime * Pick earliest native player as time source * adding a min_scale_h to limit horizontal scaling * Switch to single list for all types of widget * time changes based on native player if it exists * update after code review * Update framework for data export * export data checkpoint #1: metadata * Export pose data (MARS only for now) * Implement tick marks on both neural and annotations widgets, and labels on annotation widget * exporting data in NWB format * changes done with JSON file support in MARS pose * added pose file documentation * added documentation for pose data support * experimenting few things * changes in yml file * changes in UI and backend code * behavior triggered average plugin feature added * bug fix when there are two trials and one has NaNs * launching BTA using plugin approach * variable name changed * included offset change in image array * addition of comments * neural plotting faster and reordering of traces * switching from individual start time to trial start time with offset * offset calculation not required in BTA plugin * checking of newOrder array added * typo error in Window title rectified * replacing os.linesep with \n in behaviors saving * small bugs fix * deleted print statements * changed the function of bin size box * bug fix when there are no trials present * Feature/event triggered average (#167) * Switch to single list for all types of widget * Update framework for data export * export data checkpoint #1: metadata * Export pose data (MARS only for now) * exporting data in NWB format * changes done with JSON file support in MARS pose * added pose file documentation * added documentation for pose data support * experimenting few things * changes in yml file * changes in UI and backend code * behavior triggered average plugin feature added * bug fix when there are two trials and one has NaNs * launching BTA using plugin approach * variable name changed * included offset change in image array * addition of comments * typo error in Window title rectified * replacing os.linesep with \n in behaviors saving * small bugs fix * deleted print statements * changed the function of bin size box * bug fix when there are no trials present --------- Co-authored-by: drumph <drumph@caltech.edu> * get rid of boolean arguments in new order function * Enhancement/neural traces reordering (#170) * adds support for re-ordering of neural traces, to be used by various analysis plugins * changes for resolving merge conflict * changes done to resolve merge conflict * Bug/neural window scrolling (#173) * Switch to single list for all types of widget * Update framework for data export * export data checkpoint #1: metadata * Export pose data (MARS only for now) * exporting data in NWB format * changes done with JSON file support in MARS pose * added pose file documentation * added documentation for pose data support * experimenting few things * changes in yml file * changes in UI and backend code * behavior triggered average plugin feature added * bug fix when there are two trials and one has NaNs * launching BTA using plugin approach * variable name changed * included offset change in image array * addition of comments * neural plotting faster and reordering of traces * switching from individual start time to trial start time with offset * offset calculation not required in BTA plugin * scrolling of neural window fixed (issue #156) --------- Co-authored-by: drumph <drumph@caltech.edu> * Feature/kmeansclustering (#175) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Bug/increment trial num (#176) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Enhancement/annotations support (#177) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial * added support for different annotations file format --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Enhancement/deletebutton (#178) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial * added support for different annotations file format * added delete buttons in add or edit trial window --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Enhancement/jump to time or frame (#184) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial * added support for different annotations file format * added delete buttons in add or edit trial window * feature to jump to specific time or frame --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Enhancement/warning no annot ch (#185) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial * added support for different annotations file format * added delete buttons in add or edit trial window * feature to jump to specific time or frame * Warning when annotation is done without annot Ch --------- Co-authored-by: Ann Kennedy <annkennedy05@gmail.com> * Bug/new environment file (#191) * scrolling of neural window fixed (issue #156) * added feature to do kMeans Clustering * bug fix for trial number increment when editing trial * added support for different annotations file format * added delete buttons in add or edit trial window * feature to jump to specific time or frame * Warning when annotation is done without annot Ch * added single environment file for all platforms --------- Co-authored-by: Venus Sherathiya <32345130+venus-sherathiya@users.noreply.github.com> --------- Co-authored-by: drumph <drumph@caltech.edu> Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com> Co-authored-by: Dave Rumph <60712318+daverumph@users.noreply.github.com> Co-authored-by: Venus Sherathiya <32345130+venus-sherathiya@users.noreply.github.com>
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Pull updates of the documentation from main into develop