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README.Rmd
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README.Rmd
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---
title: "README"
author: "<h4>Authors:</h4> Momoko Otani, Brian M. Schilder, Nathan G. Skene"
date: "<h4>README updated: <i>`r format( Sys.Date(), '%b-%d-%Y')`</i></h4>"
output:
github_document
---
# About
Prioritise cell-type-specific gene targets from
the [Rare Disease Celltyping](https://neurogenomics.github.io/rare_disease_celltyping_apps/home/)
project.
Thesis project by Momoko Otani, supervised by Nathan Skene and Brian Schilder.
# Rmarkdown reports
## [Prioritise targets](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/prioritise_targets)
### [Reduced network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/top_targets_network.html)
### [Extended network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/all_targets_network.html)
## [HPO annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/HPO_annotations)
## [Neurodegeneration](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/neurodegeneration)
### [dementia/neurodegeneration vs. diabetes/obesity network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/dementia_diabetes_network.html)
## [Cardiovascular](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/cardiovascular.html)
### [Default network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_network.html)
### [Hierarchical network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_hierarchical_network.html)
## [Symptoms](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/symptoms)
## [Differential outcomes](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/differential_outcomes)
## [GPT annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/gpt_annotations)
## [Orphanet prevalence data](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/orphanet_prevalence)
## [CSL Areas of Interest](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/CSL)