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building_manuscript.md

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Instructions to builld Neuroview related content

This document explains how to build some of the pages that are related to the Neuroview paper.

Adding new authors to the brainhack consortium

This is the procedure to add authors to the preprint under the Brainhack consortium.

  1. Add the new member to the OSF project as a non-bibliographic contributor.
  • This can be made quicker if the person has a an OSF ID. Otherwise the person has to be added as an unregistered contributor with surname, name and email.
  • Note that this might require Admin access to the project.
  • Put the new member in the correct position (alphabetical order in the general team) and save the new contributor list.
  1. Add the new member to the pre-print (Edit preprint --> Authors section) and follow the same procedure as above to put the person in the right position in the author list. This too might require admin access to the preprint.

Update the list of authors in the PDF

  1. Follow the CONTRIBUTING instructions to generate an virtual environment and install all dependencies.

  2. Add the late comer to the bottom of those 2 files:

    • data/affiliation_and_consent_for_the_brainhack_neuroview_preprint_raw.tsv
    • data/affiliations_curated.tsv
    • follow the format, check typo manually.
    • commit those changes to the repo.

  3. Run the following command: make manuscript

  4. Use the generated data/authors_affiliations.tsv (MUST be converted to .xlsx format to accomandate special characters) file as input in the online NIH author arranger to create the authors_affiliations_preprint.docx that contains the list of authors and affiliations.

  5. Copy paste the relevant part of those lists in the google doc ofd the manuscript

    • make sure to paste the "general team" members under the Brainhack consortium section.

  6. Download the google doc as a PDF and upload the version of the preprint on psyarxiv.

Updating the pages of the jupyter book with NeuroView related content

  1. Run the following command:

make contributors make bookpage

Commit the resulting ouput and open a pull request to add the changes.

Final cross-check

Make sure that the order of authors match:

  • on the OSF project
  • on the psyarxiv preprint
  • in the pdf document