feat(cli): add read-annotation subcommand #1266
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This moves functionality of `genemap` and `featuretree` standalone executables into `nextclade` executable. From docs (upcoming): The `read-annotation` subcommand takes a GFF3 file and displays how features are arranged hierarchically as viewed by Nextclade. This might be useful for Nextclade developers and dataset curators in oder to verify that Nextclade correctly understand genetic features from a particular GFF3 file. Example usage: ```bash nextclade read-annotation genome_annotation.gff3 ``` Type `nextclade read-annotation --help` for description of arguments.
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This moves functionality of
genemapandfeaturetreestandalone executables intonextcladeexecutable.From docs (upcoming):
The
read-annotationsubcommand takes a GFF3 file and displays how features are arranged hierarchically as viewed by Nextclade. This might be useful for Nextclade developers and dataset curators in oder to verify that Nextclade correctly understand genetic features from a particular GFF3 file.Example usage:
Type
nextclade read-annotation --helpfor description of arguments.