Upload data from fauna to S3 #121
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name: Upload data from fauna to S3 | |
# Only support manual trigger of this workflow. | |
on: | |
workflow_dispatch: | |
inputs: | |
triggerPublic: | |
description: "Trigger Nextstrain public builds" | |
required: true | |
type: boolean | |
publicDockerImage: | |
description: "Specific container image to use for Nextstrain public builds" | |
required: false | |
type: string | |
triggerPrivateNextflu: | |
description: "Trigger private Nextflu builds" | |
required: true | |
type: boolean | |
privateNextfluDockerImage: | |
description: "Specific container image to use for private Nextflu builds" | |
required: false | |
type: string | |
triggerNextfluPrivate: | |
description: "Trigger nextflu-private group builds" | |
required: true | |
type: boolean | |
nextfluPrivateDockerImage: | |
description: "Specific container image to use for nextflu-private group builds" | |
required: false | |
type: string | |
triggerNextclade: | |
description: "Trigger run-nextclade workflow" | |
required: true | |
type: boolean | |
nextcladeDockerImage: | |
description: "Specific container image to use for the Nextclade workflow" | |
required: false | |
type: string | |
jobs: | |
upload: | |
permissions: | |
id-token: write | |
uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
secrets: inherit | |
with: | |
runtime: docker | |
run: | | |
nextstrain build \ | |
--env RETHINK_AUTH_KEY \ | |
--env RETHINK_HOST \ | |
. \ | |
-j 4 \ | |
upload_all_titers \ | |
upload_all_raw_sequences \ | |
upload_all_sequences \ | |
upload_all_metadata \ | |
--configfile profiles/upload.yaml | |
trigger: | |
needs: [upload] | |
strategy: | |
matrix: | |
include: | |
- trigger: ${{ inputs.triggerPublic }} | |
workflow: run-public-builds.yaml | |
image: ${{ inputs.publicDockerImage }} | |
- trigger: ${{ inputs.triggerPrivateNextflu }} | |
workflow: run-private-nextflu-builds.yaml | |
image: ${{ inputs.privateNextfluDockerImage }} | |
- trigger: ${{ inputs.triggerNextfluPrivate }} | |
workflow: run-nextflu-private-builds.yaml | |
image: ${{ inputs.nextfluPrivateDockerImage }} | |
- trigger: ${{ inputs.triggerNextclade }} | |
workflow: run-nextclade.yaml | |
image: ${{ inputs.nextcladeDockerImage }} | |
runs-on: ubuntu-latest | |
steps: | |
- if: ${{ matrix.trigger }} | |
name: Trigger ${{ matrix.workflow }} | |
run: | | |
gh workflow run \ | |
${{ matrix.workflow }} \ | |
--repo nextstrain/seasonal-flu \ | |
-f dockerImage=${{ matrix.image }} | |
env: | |
GITHUB_TOKEN: ${{ github.token }} |