Refine titer figures

nextstrain · Sep 13, 2024 · bddf3d1 · bddf3d1
1 parent 981a508
commit bddf3d1
Show file tree

Hide file tree

Showing 4 changed files with 3 additions and 5 deletions.
diff --git a/config/references_for_titer_plots_h1n1pdm.txt b/config/references_for_titer_plots_h1n1pdm.txt
@@ -4,7 +4,6 @@ A/Victoria/376/2024 # C.1.9
 A/Lisbon/188/2023 # C.1.9:216A
 A/Connecticut/17/2023 # C.1.8:96T
 A/Canberra/4/2024 # C.1.8:96T
-A/Darwin/328/2024 # C.1.8:96T
 A/Darwin/370/2024 # C.1.8:I47V-E66K-I96T-A141E-T241R
 A/Darwin/463/2023 # C.1.7.1
 A/Darwin/7/2023 # C.1.6

diff --git a/config/references_for_titer_plots_vic.txt b/config/references_for_titer_plots_vic.txt
@@ -2,9 +2,9 @@ B/Austria/1359417/2021 # C, vaccine strain
 B/Lao/F4529/2023 # C.5.7
 B/Ranong/373/2023 # C.5.7
 B/Tokyo/23150/2023 # C.5.7
-B/Utah/11/2023 # C.5.1
 B/Alabama/7/2023 # C.5.6
 B/Kanagawa/IC2360/2024 # C.5.6
+B/Utah/11/2023 # C.5.1
 B/Massachusetts/1/2021 # C.5
 B/Nepal/21FL2507/2021 # C.5
 

diff --git a/config/subclades_for_titer_plots_h1n1pdm.txt b/config/subclades_for_titer_plots_h1n1pdm.txt
@@ -1,6 +1,5 @@
 C.1
-C.1.7
-C.1.7.1
+C.1.7.2
 C.1.8
 C.1.9
 D

diff --git a/scripts/plot_antigenic_distances_between_strains.py b/scripts/plot_antigenic_distances_between_strains.py
@@ -188,7 +188,7 @@
         order=reference_order,
         hue_order=clade_order,
         data=filtered_df,
-        dodge=0.55,
+        dodge=0.75,
         linestyle='none',
         palette=color_by_clade,
         markers="d",