From bddf3d16205546f527a8ea7229a263b72b49d787 Mon Sep 17 00:00:00 2001 From: John Huddleston Date: Fri, 13 Sep 2024 15:19:32 -0700 Subject: [PATCH] Refine titer figures --- config/references_for_titer_plots_h1n1pdm.txt | 1 - config/references_for_titer_plots_vic.txt | 2 +- config/subclades_for_titer_plots_h1n1pdm.txt | 3 +-- scripts/plot_antigenic_distances_between_strains.py | 2 +- 4 files changed, 3 insertions(+), 5 deletions(-) diff --git a/config/references_for_titer_plots_h1n1pdm.txt b/config/references_for_titer_plots_h1n1pdm.txt index a0b98346..fc09aa7e 100644 --- a/config/references_for_titer_plots_h1n1pdm.txt +++ b/config/references_for_titer_plots_h1n1pdm.txt @@ -4,7 +4,6 @@ A/Victoria/376/2024 # C.1.9 A/Lisbon/188/2023 # C.1.9:216A A/Connecticut/17/2023 # C.1.8:96T A/Canberra/4/2024 # C.1.8:96T -A/Darwin/328/2024 # C.1.8:96T A/Darwin/370/2024 # C.1.8:I47V-E66K-I96T-A141E-T241R A/Darwin/463/2023 # C.1.7.1 A/Darwin/7/2023 # C.1.6 diff --git a/config/references_for_titer_plots_vic.txt b/config/references_for_titer_plots_vic.txt index a8712604..d0c377d8 100644 --- a/config/references_for_titer_plots_vic.txt +++ b/config/references_for_titer_plots_vic.txt @@ -2,9 +2,9 @@ B/Austria/1359417/2021 # C, vaccine strain B/Lao/F4529/2023 # C.5.7 B/Ranong/373/2023 # C.5.7 B/Tokyo/23150/2023 # C.5.7 -B/Utah/11/2023 # C.5.1 B/Alabama/7/2023 # C.5.6 B/Kanagawa/IC2360/2024 # C.5.6 +B/Utah/11/2023 # C.5.1 B/Massachusetts/1/2021 # C.5 B/Nepal/21FL2507/2021 # C.5 diff --git a/config/subclades_for_titer_plots_h1n1pdm.txt b/config/subclades_for_titer_plots_h1n1pdm.txt index af794c13..8bfe8574 100644 --- a/config/subclades_for_titer_plots_h1n1pdm.txt +++ b/config/subclades_for_titer_plots_h1n1pdm.txt @@ -1,6 +1,5 @@ C.1 -C.1.7 -C.1.7.1 +C.1.7.2 C.1.8 C.1.9 D diff --git a/scripts/plot_antigenic_distances_between_strains.py b/scripts/plot_antigenic_distances_between_strains.py index cfdd4611..88367d10 100644 --- a/scripts/plot_antigenic_distances_between_strains.py +++ b/scripts/plot_antigenic_distances_between_strains.py @@ -188,7 +188,7 @@ order=reference_order, hue_order=clade_order, data=filtered_df, - dodge=0.55, + dodge=0.75, linestyle='none', palette=color_by_clade, markers="d",