Merge pull request #215 from luslab/dev #561

Run time

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Job	Run time
Run standard pipeline test (23.04.0)	10m 19s
Run extended pipeline test (23.04.0)	23m 10s
Run standard pipeline test	7m 53s
Run extended pipeline test	17m 44s
Run standard pipeline test (edge version)	7m 48s
23.04.0 test_genome_options	4m 46s
23.04.0 test_genome_options_spikein	8m 32s
23.04.0 test_samplesheet	18m 24s
23.04.0 test_samplesheet_2	3m 12s
23.04.0 test_samplesheet_3	1m 1s
23.04.0 test_filtering_noqfilter	5m 10s
23.04.0 test_filtering_withqfilter	5m 41s
23.04.0 test_bam_scale_none	3m 48s
23.04.0 test_bam_scale_spikein	3m 45s
23.04.0 test_bam_scale_cpm	5m 5s
23.04.0 test_bam_scale_rpkm	5m 2s
23.04.0 test_bam_scale_bpm	3m 51s
23.04.0 test_bam_scale_cpm_iggscale	4m 40s
23.04.0 test_peak_callers_seacr	6m 49s
23.04.0 test_peak_callers_macs2	12m 21s
23.04.0 test_peak_callers_invalid	53s
23.04.0 test_peak_callers_seacr_macs2	4m 7s
23.04.0 test_peak_callers_macs2_seacr	4m 56s
23.04.0 test_peak_callers_seacr_macs2_noigg	4m 17s
23.04.0 test_peak_callers_ctrl_tests	9m 3s
23.04.0 test_consensus_peaks_group	8m 13s
23.04.0 test_consensus_peaks_all	8m 12s
23.04.0 test_consensus_peaks_invalid	46s
23.04.0 verify_output_only_input	1m 9s
23.04.0 verify_output_save_merged	1m 44s
23.04.0 verify_output_save_trimmed	1m 57s
23.04.0 verify_output_skip_trimming	1m 42s
23.04.0 verify_output_skip_fastqc	1m 30s
23.04.0 verify_output_save_ref	1m 39s
23.04.0 verify_output_align_only_align	4m 10s
23.04.0 verify_output_align_only_align_end_to_end	2m 27s
23.04.0 verify_output_align_only_align_local	2m 45s
23.04.0 verify_output_align_intermed	4m 37s
23.04.0 verify_output_align_save_spikein_align	2m 21s
23.04.0 verify_output_align_save_unaligned	2m 26s
23.04.0 verify_output_align_duplicates_mark	4m 38s
23.04.0 verify_output_align_duplicates_remove	4m 15s
23.04.0 verify_output_align_duplicates_remove_target	4m 41s
23.04.0 verify_output_align_linear_duplicates_remove	6m 8s
23.04.0 verify_output_align_linear_duplicates_remove_target	4m 56s
23.04.0 verify_output_only_filtering	7m 52s
23.04.0 verify_output_only_filtering_with_mitochondrial_reads	4m 14s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads	5m 6s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	4m 49s
23.04.0 verify_output_peak_calling_only_peak_calling	7m 42s
23.04.0 verify_output_reporting_skip_preseq_false	6m 14s
23.04.0 verify_output_reporting_skip_preseq_true	7m 45s
23.04.0 verify_output_reporting_skip_dtqc_false	20m 12s
23.04.0 verify_output_reporting_skip_dtqc_true	19m 45s
23.04.0 verify_output_reporting_skip_heatmaps_false	7m 9s
23.04.0 verify_output_reporting_skip_heatmaps_true	5m 38s
23.04.0 verify_output_reporting_skip_heatmaps_grouped	8m 36s
23.04.0 verify_output_reporting_skip_igv_false	7m 3s
23.04.0 verify_output_reporting_skip_igv_true	8m 33s
23.04.0 verify_output_reporting_skip_multiqc_false	7m 39s
23.04.0 verify_output_reporting_skip_multiqc_true	8m 14s
23.04.0 verify_output_reporting_skip_peak_qc_false	11m 15s
23.04.0 verify_output_reporting_skip_peak_qc_true	9m 4s
23.04.0 verify_output_reporting_skip_reporting	5m 6s
test_genome_options	5m 18s
test_genome_options_spikein	10m 28s
test_samplesheet	16m 16s
test_samplesheet_2	4m 18s
test_samplesheet_3	1m 22s
test_filtering_noqfilter	6m 41s
test_filtering_withqfilter	4m 43s
test_bam_scale_none	3m 37s
test_bam_scale_spikein	5m 21s
test_bam_scale_cpm	4m 0s
test_bam_scale_rpkm	4m 27s
test_bam_scale_bpm	3m 44s
test_bam_scale_cpm_iggscale	4m 4s
test_peak_callers_seacr	6m 36s
test_peak_callers_macs2	13m 12s
test_peak_callers_invalid	38s
test_peak_callers_seacr_macs2	4m 22s
test_peak_callers_macs2_seacr	4m 53s
test_peak_callers_seacr_macs2_noigg	3m 11s
test_peak_callers_ctrl_tests	9m 17s
test_consensus_peaks_group	6m 46s
test_consensus_peaks_all	7m 1s
test_consensus_peaks_invalid	50s
verify_output_only_input	1m 9s
verify_output_save_merged	2m 14s
verify_output_save_trimmed	2m 17s
verify_output_skip_trimming	1m 24s
verify_output_skip_fastqc	1m 42s
verify_output_save_ref	1m 12s
verify_output_align_only_align	3m 43s
verify_output_align_only_align_end_to_end	2m 14s
verify_output_align_only_align_local	2m 29s
verify_output_align_intermed	4m 17s
verify_output_align_save_spikein_align	2m 12s
verify_output_align_save_unaligned	2m 17s
verify_output_align_duplicates_mark	4m 0s
verify_output_align_duplicates_remove	5m 16s
verify_output_align_duplicates_remove_target	4m 49s
verify_output_align_linear_duplicates_remove	4m 37s
verify_output_align_linear_duplicates_remove_target	4m 25s
verify_output_only_filtering	9m 38s
verify_output_only_filtering_with_mitochondrial_reads	5m 5s
verify_output_only_filtering_without_mitochondrial_reads	3m 51s
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	4m 5s
verify_output_peak_calling_only_peak_calling	8m 3s
verify_output_reporting_skip_preseq_false	7m 41s
verify_output_reporting_skip_preseq_true	6m 26s
verify_output_reporting_skip_dtqc_false	19m 39s
verify_output_reporting_skip_dtqc_true	17m 22s
verify_output_reporting_skip_heatmaps_false	9m 30s
verify_output_reporting_skip_heatmaps_true	5m 56s
verify_output_reporting_skip_heatmaps_grouped	8m 6s
verify_output_reporting_skip_igv_false	7m 23s
verify_output_reporting_skip_igv_true	8m 34s
verify_output_reporting_skip_multiqc_false	9m 3s
verify_output_reporting_skip_multiqc_true	6m 59s
verify_output_reporting_skip_peak_qc_false	8m 0s
verify_output_reporting_skip_peak_qc_true	7m 37s
verify_output_reporting_skip_reporting	4m 20s
	12h 33m 9s

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Merge pull request #215 from luslab/dev #561

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Merge pull request #215 from luslab/dev #561

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