Updates #571
Triggered via pull request
January 31, 2024 16:45
chris-cheshire
Status
Cancelled
Total duration
1m 48s
Artifacts
–
ci.yml
on: pull_request
Run standard pipeline test (edge version)
1m 5s
Matrix: Run standard pipeline test
Matrix: Run extended pipeline test
Matrix: unit_tests
Annotations
120 errors and 92 warnings
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23.04.0 verify_output_reporting_skip_dtqc_false
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23.04.0 verify_output_reporting_skip_dtqc_false
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23.04.0 verify_output_align_only_align
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23.04.0 verify_output_reporting_skip_dtqc_true
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23.04.0 verify_output_skip_trimming
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23.04.0 verify_output_reporting_skip_heatmaps_false
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23.04.0 verify_output_only_input
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23.04.0 verify_output_reporting_skip_heatmaps_true
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23.04.0 verify_output_reporting_skip_heatmaps_grouped
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23.04.0 verify_output_peak_calling_only_peak_calling
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23.04.0 verify_output_save_merged
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23.04.0 verify_output_reporting_skip_igv_false
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23.04.0 verify_output_reporting_skip_preseq_false
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23.04.0 verify_output_reporting_skip_multiqc_false
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23.04.0 verify_output_reporting_skip_peak_qc_false
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23.04.0 verify_output_reporting_skip_igv_true
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23.04.0 verify_output_reporting_skip_multiqc_true
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23.04.0 verify_output_reporting_skip_peak_qc_true
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23.04.0 verify_output_reporting_skip_reporting
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test_samplesheet
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verify_output_align_only_align
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test_samplesheet_3
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verify_output_align_duplicates_remove
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verify_output_align_intermed
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verify_output_align_only_align_end_to_end
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verify_output_only_input
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verify_output_skip_fastqc
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verify_output_save_merged
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verify_output_align_duplicates_mark
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verify_output_align_linear_duplicates_remove
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verify_output_align_only_align_local
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verify_output_align_duplicates_remove_target
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verify_output_align_save_unaligned
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verify_output_align_save_spikein_align
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verify_output_only_filtering_without_mitochondrial_reads
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verify_output_only_filtering_without_mitochondrial_reads_mito_name_null
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verify_output_only_filtering_with_mitochondrial_reads
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verify_output_only_filtering
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verify_output_reporting_skip_multiqc_false
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verify_output_align_linear_duplicates_remove_target
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verify_output_skip_trimming
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verify_output_reporting_skip_peak_qc_false
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verify_output_reporting_skip_preseq_true
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verify_output_peak_calling_only_peak_calling
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verify_output_reporting_skip_multiqc_true
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verify_output_reporting_skip_dtqc_true
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verify_output_reporting_skip_heatmaps_false
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verify_output_reporting_skip_dtqc_false
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verify_output_reporting_skip_heatmaps_true
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verify_output_save_ref
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verify_output_reporting_skip_heatmaps_grouped
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verify_output_reporting_skip_preseq_false
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verify_output_reporting_skip_igv_false
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test_bam_scale_cpm
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verify_output_reporting_skip_peak_qc_true
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test_bam_scale_bpm
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verify_output_save_trimmed
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test_bam_scale_rpkm
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test_bam_scale_none
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test_bam_scale_cpm_iggscale
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test_bam_scale_spikein
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test_consensus_peaks_invalid
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test_consensus_peaks_all
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test_filtering_noqfilter
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test_filtering_withqfilter
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test_genome_options
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test_peak_callers_ctrl_tests
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test_genome_options_spikein
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test_consensus_peaks_group
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test_peak_callers_invalid
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verify_output_reporting_skip_reporting
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verify_output_reporting_skip_igv_true
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test_peak_callers_macs2
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test_peak_callers_seacr_macs2
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test_peak_callers_seacr_macs2_noigg
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test_peak_callers_macs2_seacr
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test_peak_callers_seacr
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test_samplesheet_2
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23.04.0 verify_output_reporting_skip_preseq_true
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23.04.0 test_peak_callers_seacr
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23.04.0 test_bam_scale_cpm
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Run extended pipeline test
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23.04.0 verify_output_only_filtering_with_mitochondrial_reads
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23.04.0 verify_output_align_duplicates_remove_target
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23.04.0 verify_output_align_intermed
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Run standard pipeline test (edge version)
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Run standard pipeline test (23.04.0)
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23.04.0 verify_output_align_save_unaligned
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23.04.0 test_samplesheet_2
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23.04.0 verify_output_align_linear_duplicates_remove
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23.04.0 verify_output_only_filtering
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23.04.0 test_bam_scale_cpm_iggscale
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23.04.0 test_bam_scale_spikein
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23.04.0 verify_output_only_filtering_without_mitochondrial_reads
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23.04.0 test_filtering_withqfilter
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23.04.0 verify_output_save_trimmed
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23.04.0 verify_output_skip_fastqc
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23.04.0 verify_output_align_save_spikein_align
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23.04.0 test_consensus_peaks_group
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23.04.0 verify_output_align_linear_duplicates_remove_target
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23.04.0 verify_output_align_only_align_local
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23.04.0 test_genome_options_spikein
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23.04.0 test_peak_callers_ctrl_tests
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23.04.0 test_bam_scale_rpkm
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23.04.0 verify_output_align_only_align_end_to_end
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Run standard pipeline test
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23.04.0 test_bam_scale_none
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23.04.0 test_peak_callers_macs2_seacr
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23.04.0 test_genome_options
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Run extended pipeline test (23.04.0)
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23.04.0 verify_output_align_duplicates_remove
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23.04.0 test_peak_callers_macs2
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23.04.0 test_bam_scale_bpm
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23.04.0 test_filtering_noqfilter
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23.04.0 test_peak_callers_seacr_macs2
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23.04.0 test_peak_callers_seacr_macs2_noigg
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23.04.0 verify_output_align_duplicates_mark
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23.04.0 test_consensus_peaks_all
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23.04.0 verify_output_save_ref
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23.04.0 test_samplesheet
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23.04.0 test_consensus_peaks_invalid
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_consensus_peaks_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_invalid
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_invalid
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_samplesheet_3
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_samplesheet_3
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_reporting_skip_preseq_true
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_reporting_skip_preseq_true
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_seacr
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_cpm
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_cpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run extended pipeline test
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run extended pipeline test
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_only_filtering_with_mitochondrial_reads
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_only_filtering_with_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_duplicates_remove_target
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_intermed
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_intermed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run standard pipeline test (edge version)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run standard pipeline test (edge version)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run standard pipeline test (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run standard pipeline test (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_samplesheet_2
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_save_unaligned
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_samplesheet_2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_save_unaligned
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_linear_duplicates_remove
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_linear_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_only_filtering
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_only_filtering
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_cpm_iggscale
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_cpm_iggscale
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_spikein
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_only_filtering_without_mitochondrial_reads
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_only_filtering_without_mitochondrial_reads
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_filtering_withqfilter
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_filtering_withqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_save_trimmed
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_save_trimmed
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_save_spikein_align
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_skip_fastqc
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_save_spikein_align
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_skip_fastqc
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_consensus_peaks_group
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_consensus_peaks_group
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_linear_duplicates_remove_target
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_linear_duplicates_remove_target
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_only_align_local
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_only_align_local
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_genome_options_spikein
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_genome_options_spikein
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_ctrl_tests
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_ctrl_tests
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_rpkm
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_rpkm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_only_align_end_to_end
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_only_align_end_to_end
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run standard pipeline test
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run standard pipeline test
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_none
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_none
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_macs2_seacr
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_genome_options
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_macs2_seacr
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_genome_options
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run extended pipeline test (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run extended pipeline test (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_duplicates_remove
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_duplicates_remove
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_macs2
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_bam_scale_bpm
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_bam_scale_bpm
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_filtering_noqfilter
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_seacr_macs2
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_filtering_noqfilter
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_seacr_macs2
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_peak_callers_seacr_macs2_noigg
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_peak_callers_seacr_macs2_noigg
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_align_duplicates_mark
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_align_duplicates_mark
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_consensus_peaks_all
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_consensus_peaks_all
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_save_ref
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_save_ref
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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23.04.0 test_samplesheet
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, actions/setup-python@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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23.04.0 test_samplesheet
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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