Updates #575

Run time

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Job	Run time
Run extended pipeline test (23.04.0)	6m 25s
Run standard pipeline test (edge version)	5m 13s
Run standard pipeline test (23.04.0)	5m 23s
Run standard pipeline test	5m 6s
Run extended pipeline test	6m 24s
23.04.0 test_genome_options	3m 8s
23.04.0 test_genome_options_spikein	4m 49s
23.04.0 test_samplesheet	4m 3s
23.04.0 test_samplesheet_2	2m 38s
23.04.0 test_samplesheet_3	43s
23.04.0 test_filtering_noqfilter	3m 3s
23.04.0 test_filtering_withqfilter	3m 6s
23.04.0 test_bam_scale_none	2m 18s
23.04.0 test_bam_scale_spikein	2m 28s
23.04.0 test_bam_scale_cpm	2m 27s
23.04.0 test_bam_scale_rpkm	2m 48s
23.04.0 test_bam_scale_bpm	2m 50s
23.04.0 test_bam_scale_cpm_iggscale	2m 36s
23.04.0 test_peak_callers_seacr	4m 16s
23.04.0 test_peak_callers_macs2	4m 33s
23.04.0 test_peak_callers_invalid	31s
23.04.0 test_peak_callers_seacr_macs2	2m 27s
23.04.0 test_peak_callers_macs2_seacr	2m 39s
23.04.0 test_peak_callers_seacr_macs2_noigg	1m 58s
23.04.0 test_peak_callers_ctrl_tests	4m 23s
23.04.0 test_consensus_peaks_group	4m 32s
23.04.0 test_consensus_peaks_all	4m 12s
23.04.0 test_consensus_peaks_invalid	34s
23.04.0 verify_output_only_input	47s
23.04.0 verify_output_save_merged	1m 15s
23.04.0 verify_output_save_trimmed	2m 10s
23.04.0 verify_output_skip_trimming	1m 14s
23.04.0 verify_output_skip_fastqc	1m 23s
23.04.0 verify_output_save_ref	1m 4s
23.04.0 verify_output_align_only_align	1m 20s
23.04.0 verify_output_align_only_align_end_to_end	1m 58s
23.04.0 verify_output_align_only_align_local	1m 54s
23.04.0 verify_output_align_intermed	2m 45s
23.04.0 verify_output_align_save_spikein_align	2m 0s
23.04.0 verify_output_align_save_unaligned	2m 0s
23.04.0 verify_output_align_duplicates_mark	2m 19s
23.04.0 verify_output_align_duplicates_remove	2m 43s
23.04.0 verify_output_align_duplicates_remove_target	2m 41s
23.04.0 verify_output_align_linear_duplicates_remove	2m 42s
23.04.0 verify_output_align_linear_duplicates_remove_target	2m 40s
23.04.0 verify_output_only_filtering	2m 33s
23.04.0 verify_output_only_filtering_with_mitochondrial_reads	2m 26s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads	2m 18s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	2m 4s
23.04.0 verify_output_peak_calling_only_peak_calling	1m 19s
23.04.0 verify_output_reporting_skip_preseq_false	1m 17s
23.04.0 verify_output_reporting_skip_preseq_true	2m 3s
23.04.0 verify_output_reporting_skip_dtqc_false	2m 4s
23.04.0 verify_output_reporting_skip_dtqc_true	1m 59s
23.04.0 verify_output_reporting_skip_heatmaps_false	1m 57s
23.04.0 verify_output_reporting_skip_heatmaps_true	1m 55s
23.04.0 verify_output_reporting_skip_heatmaps_grouped	1m 44s
23.04.0 verify_output_reporting_skip_igv_false	1m 44s
23.04.0 verify_output_reporting_skip_igv_true	1m 41s
23.04.0 verify_output_reporting_skip_multiqc_false	1m 40s
23.04.0 verify_output_reporting_skip_multiqc_true	1m 38s
23.04.0 verify_output_reporting_skip_peak_qc_false	1m 39s
23.04.0 verify_output_reporting_skip_peak_qc_true	1m 36s
23.04.0 verify_output_reporting_skip_reporting	1m 25s
test_genome_options	1s
test_genome_options_spikein	1s
test_samplesheet	1s
test_samplesheet_2	1s
test_samplesheet_3	1s
test_filtering_noqfilter	1s
test_filtering_withqfilter	1s
test_bam_scale_none	33s
test_bam_scale_spikein	20s
test_bam_scale_cpm	1m 3s
test_bam_scale_rpkm	30s
test_bam_scale_bpm	1m 15s
test_bam_scale_cpm_iggscale	1m 0s
test_peak_callers_seacr	1s
test_peak_callers_macs2	1s
test_peak_callers_invalid	1s
test_peak_callers_seacr_macs2	1s
test_peak_callers_macs2_seacr	1s
test_peak_callers_seacr_macs2_noigg	1s
test_peak_callers_ctrl_tests	1s
test_consensus_peaks_group	18s
test_consensus_peaks_all	24s
test_consensus_peaks_invalid	10s
verify_output_only_input	1s
verify_output_save_merged	1s
verify_output_save_trimmed	1s
verify_output_skip_trimming	1s
verify_output_skip_fastqc	1s
verify_output_save_ref	1s
verify_output_align_only_align	1s
verify_output_align_only_align_end_to_end	1s
verify_output_align_only_align_local	1s
verify_output_align_intermed	1s
verify_output_align_save_spikein_align	1s
verify_output_align_save_unaligned	1s
verify_output_align_duplicates_mark	1s
verify_output_align_duplicates_remove	1s
verify_output_align_duplicates_remove_target	1s
verify_output_align_linear_duplicates_remove	1s
verify_output_align_linear_duplicates_remove_target	1s
verify_output_only_filtering	1s
verify_output_only_filtering_with_mitochondrial_reads	1s
verify_output_only_filtering_without_mitochondrial_reads	1s
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	1s
verify_output_peak_calling_only_peak_calling	1s
verify_output_reporting_skip_preseq_false	1s
verify_output_reporting_skip_preseq_true	1s
verify_output_reporting_skip_dtqc_false	1s
verify_output_reporting_skip_dtqc_true	1s
verify_output_reporting_skip_heatmaps_false	1s
verify_output_reporting_skip_heatmaps_true	1s
verify_output_reporting_skip_heatmaps_grouped	1s
verify_output_reporting_skip_igv_false	1s
verify_output_reporting_skip_igv_true	1s
verify_output_reporting_skip_multiqc_false	1s
verify_output_reporting_skip_multiqc_true	1s
verify_output_reporting_skip_peak_qc_false	1s
verify_output_reporting_skip_peak_qc_true	1s
verify_output_reporting_skip_reporting	1s
	2h 49m 53s

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Updates #575

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Updates #575

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