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Issues list

Output Docs missing sections
#265 opened Nov 13, 2024 by JGroos-16
How to remove some chromosomes, e.g., chrUn_KI270438v1 bug Something isn't working
#264 opened Nov 12, 2024 by liuyang2006
uncommitted changed issue bug Something isn't working
#263 opened Oct 15, 2024 by dedeepyavaka
Multiple mapping parameters enhancement Improvement for existing functionality
#260 opened Oct 8, 2024 by KunFang93
Suggestion to implement "greenlist normalization" enhancement Improvement for existing functionality
#257 opened Sep 5, 2024 by GeroKn
@chris-cheshire
Is the default binsize really 1 when using CPM normalization? bug Something isn't working
#256 opened Aug 31, 2024 by nvictus
1
Process NFCORE_CUTANDRUN:CUTANDRUN:MULTIQC input file name collision bug Something isn't working
#255 opened Aug 30, 2024 by AprilJack
NFCORE_CUTANDRUN:CUTANDRUN:DEEPTOOLS_PLOTHEATMAP_PEAKS terminated with an error exit status (137) pipeline_error
#254 opened Aug 20, 2024 by monovich
3
ERROR ~ ERROR: Please check input samplesheet -> Read 1 FastQ file does not exist! pipeline_error
#253 opened Aug 7, 2024 by avanthikav
1
ERROR ~ Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)' pipeline_error
#252 opened Aug 7, 2024 by cutleraging
4
Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:DEEPTOOLS_QC:DEEPTOOLS_MULTIBAMSUMMARY (all_target_bams)': AttributeError: module 'matplotlib.cm' has no attribute 'register_cmap' pipeline_error
#251 opened Aug 7, 2024 by haipinghao
2
The AWS Access Key Id you provided does not exist in our records pipeline_error
#250 opened Aug 6, 2024 by cutleraging
1
PLOT_CONSENSUS_PEAKS worflow does not produce the upset plot bug Something isn't working WIP Work in progress
#248 opened Jul 24, 2024 by Alessandro201
3
Provide relative paths to resources in IGV session file bug Something isn't working feature-request Request for a new pipeline feature WIP Work in progress
#247 opened Jul 18, 2024 by siddharthab
2
How to set sample sheet without IgG control? question Further information is requested
#244 opened May 21, 2024 by yxralba088
2
picard mark duplicates error command exit status 140 pipeline_error
#240 opened Apr 30, 2024 by natpeckett
1
Generate a heatmap for consensus peaks enhancement Improvement for existing functionality
#239 opened Apr 30, 2024 by ftabaro
Error with kernel swap limit/ cgroup while executing NFCORE_CUTANDRUN:CUTANDRUN:SAMTOOLS_CUSTOMVIEW question Further information is requested WIP Work in progress
#236 opened Apr 3, 2024 by Prathyusha-konda
@chris-cheshire
2
Update MACS to v3 enhancement Improvement for existing functionality WIP Work in progress
#228 opened Jan 25, 2024 by alexpmagalhaes
@chris-cheshire
1
Align spike-in with less stringent params based on the left over from primary alignment enhancement Improvement for existing functionality WIP Work in progress
#227 opened Jan 18, 2024 by chris-cheshire
@chris-cheshire
Improve error handling after error in PREPARE_GENOME:BLACKLIST_BEDTOOLS_INTERSECT enhancement Improvement for existing functionality WIP Work in progress
#219 opened Nov 29, 2023 by H-Bell
@chris-cheshire
Version 3.2 does not run, fails in frag histogram step bug Something isn't working WIP Work in progress
#211 opened Sep 25, 2023 by skilpinen
10
Samtools Customview Fails with Unavoidable Segmentation Faults bug Something isn't working enhancement Improvement for existing functionality WIP Work in progress
#199 opened May 31, 2023 by ieres-amgen
@chris-cheshire
4
Upgrade to SEACR 1.4 enhancement Improvement for existing functionality
#64 opened Nov 10, 2021 by chris-cheshire
ProTip! Exclude everything labeled bug with -label:bug.