From e4e3728b6a2b9603c1694653c78f9769a26f1579 Mon Sep 17 00:00:00 2001
From: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
Date: Tue, 26 Mar 2024 13:28:12 +0100
Subject: [PATCH] Add Zenodo doi

---
 README.md | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index cb0a80b..d1b6d7a 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
 </h1>
 
 [![GitHub Actions CI Status](https://github.com/nf-core/detaxizer/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/detaxizer/actions/workflows/ci.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/detaxizer/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/detaxizer/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/detaxizer/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/detaxizer/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/detaxizer/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/detaxizer/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.10877147-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.10877147)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
@@ -82,8 +82,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use nf-core/detaxizer for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use nf-core/detaxizer for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.10877147)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.