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During workflow with peakpickerhires->featurefindermetabo->mapalignerposecluster->maprttransformer workflow stops after mapalignerposecluster step with error "Error executing process Caused by: Path value cannot be null"
Previously had to make adjustment to the modules.config file to get the peakpickerhires step to work (added .centroided to the filename.mzML in line 48) and had to adjust paths on lines 137 and 175 to remove ${meta.id} to fix "filename too long" error.
Command used and terminal output
command: nextflow run nf-core/metaboigniter -profile dockeroutput: WARN: Input tuple does not match input set cardinality declared by process `NFCORE_METABOIGNITER:METABOIGNITER:LINKER:OPENMS_FEATURELINKERUNLABELEDKD` -- offending value: [id:Linked_data]ERROR ~ Error executing process > 'NFCORE_METABOIGNITER:METABOIGNITER:LINKER:OPENMS_FEATURELINKERUNLABELEDKD (1)'Caused by: Path value cannot be null
Description of the bug
During workflow with peakpickerhires->featurefindermetabo->mapalignerposecluster->maprttransformer workflow stops after mapalignerposecluster step with error "Error executing process Caused by: Path value cannot be null"
Previously had to make adjustment to the modules.config file to get the peakpickerhires step to work (added .centroided to the filename.mzML in line 48) and had to adjust paths on lines 137 and 175 to remove ${meta.id} to fix "filename too long" error.
Command used and terminal output
Relevant files
files.zip
System information
Nextflow version: 23.10.1
Metaboigniter version: 2.0.0
Hardware: Desktop
Executor: local
Container engine: Docker
OS: Linux (Fedora 39)
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