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32 Open 38 Closed
32 Open 38 Closed
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Issues list

proteomicslfq and MaxQuant
#206 opened Feb 24, 2024 by luozhy88
Add highlevel steps to README
#201 opened Oct 7, 2023 by FriederikeHanssen
1
Error executing process > 'search_engine_comet (1)'
#193 opened Dec 7, 2022 by BenSamy2020
9
Question about the mzTab output format
#192 opened Oct 31, 2022 by mpage21
Errors in MultiQC ("quantms" module)
#186 opened Mar 28, 2022 by hendrikweisser
2
Memory requirements unclear
#185 opened Mar 28, 2022 by hendrikweisser
PRIDE ftp for localize test moved
#184 opened Mar 24, 2022 by jpfeuffer
Test run fails during ProteomicsLFQ - file not found ("dev" version)
#183 opened Mar 24, 2022 by hendrikweisser
2
Fraction Column is lost and reevaluated by MSStats
#174 opened Nov 23, 2021 by tillenglert
19
proteomicslfq to DSL2
#172 opened Oct 27, 2021 by jpfeuffer
new modules: needed OpenMS tools
#171 opened Oct 27, 2021 by jpfeuffer
Add samplesheet validation
#170 opened Oct 27, 2021 by jpfeuffer
1
Version parsing regex can't parse some valid version
#164 opened Oct 6, 2021 by fabianegli
2
How to deal with FAMIS data?
#156 opened Aug 19, 2021 by vegetablebird123
13
[FEATURE] Guess decoy string everywhere
#152 opened Jun 23, 2021 by jpfeuffer
Refine pmultiQC step
#150 opened Jun 22, 2021 by jpfeuffer
[Feature] Download SDRF via PRIDE accession only enhancement New feature or request
#139 opened Apr 14, 2021 by jpfeuffer
TODO Support multiple search settings on the same file
#127 opened Feb 26, 2021 by jpfeuffer
Comet search with Lys-C digestion fails
#124 opened Feb 2, 2021 by ncarrut
5
Warn and fail if an experimental design is specified together with an SDRF as --input enhancement New feature or request good first issue Good for newcomers
#112 opened Nov 13, 2020 by jpfeuffer
1
Restart with peakpicking openms enhancement New feature or request
#110 opened Nov 12, 2020 by ypriverol
@jpfeuffer
3
Some errors while processing a QC HeLa file bug Something isn't working low-priority Low priority issue
#100 opened Oct 21, 2020 by rolivella
1
Cleanup enhancement New feature or request good first issue Good for newcomers
#88 opened Aug 27, 2020 by jpfeuffer
Allow "per-sample" processing enhancement New feature or request low-priority Low priority issue
#78 opened Aug 5, 2020 by jpfeuffer
2
Allow auto download of the reference proteome fasta for a given organism enhancement New feature or request good first issue Good for newcomers
#75 opened Jul 24, 2020 by jpfeuffer
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