Update centrifuge to fix CONDA bug

nf-core · Dec 19, 2024 · 4946d78 · 4946d78
1 parent 79055cd
commit 4946d78
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,10 +7,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Added`
 
+- [#558](https://github.com/nf-core/taxprofiler/pull/558) Updated to nf-core pipeline template v3.1.0 (added by @LilyAnderssonLee)
+
 ### `Fixed`
 
+- [#561](https://github.com/nf-core/taxprofiler/pull/561) Updated Centrifuge to fix internal error when running with conda (❤️ to @AnotherSimon for reporting, fix by @jfy133)
+
 ### `Dependencies`
 
+| Tool       | Previous version | New version |
+| ---------- | ---------------- | ----------- |
+| centrifuge | 1.0.4.1          | 1.0.4.1     |
+
 ### `Deprecated`
 
 ## v1.2.1 - Bouncy Basenji Patch [2024-11-28]

diff --git a/modules.json b/modules.json
@@ -42,12 +42,12 @@
                     },
                     "centrifuge/centrifuge": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "8581a564b0acbe28e222570ce395278f91705dc5",
                         "installed_by": ["modules"]
                     },
                     "centrifuge/kreport": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "8581a564b0acbe28e222570ce395278f91705dc5",
                         "installed_by": ["modules"]
                     },
                     "diamond/blastx": {

diff --git a/modules/nf-core/centrifuge/centrifuge/environment.yml b/modules/nf-core/centrifuge/centrifuge/environment.yml
diff --git a/modules/nf-core/centrifuge/centrifuge/main.nf b/modules/nf-core/centrifuge/centrifuge/main.nf
diff --git a/modules/nf-core/centrifuge/centrifuge/meta.yml b/modules/nf-core/centrifuge/centrifuge/meta.yml
diff --git a/modules/nf-core/centrifuge/kreport/environment.yml b/modules/nf-core/centrifuge/kreport/environment.yml
diff --git a/modules/nf-core/centrifuge/kreport/main.nf b/modules/nf-core/centrifuge/kreport/main.nf
diff --git a/modules/nf-core/centrifuge/kreport/meta.yml b/modules/nf-core/centrifuge/kreport/meta.yml