Merge pull request #567 from nf-core/fix-release-tests-for-condasingu…

…larity Use profile variable instead of hardcoding docker
nf-core · Jan 14, 2025 · c16ea83 · c16ea83
2 parents b4e9985 + 6be6184
commit c16ea83
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -100,7 +100,7 @@ jobs:
             echo "motus,db1_mOTU,,short,db_mOTU" >> 'database_motus.csv'
             echo "motus,db2_mOTU,,long,db_mOTU" >> 'database_motus.csv'
             echo "motus,db3_mOTU,,short;long,db_mOTU" >> 'database_motus.csv'
-            nextflow run ${GITHUB_WORKSPACE} -profile docker,${{ matrix.test_name }} --databases ./database_motus.csv --outdir ./results_${{ matrix.test_name }};
+            nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.profile }},${{ matrix.test_name }} --databases ./database_motus.csv --outdir ./results_${{ matrix.test_name }};
           else
-            nextflow run ${GITHUB_WORKSPACE} -profile docker,${{ matrix.test_name }} --outdir ./results_${{ matrix.test_name }};
+            nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.profile }},${{ matrix.test_name }} --outdir ./results_${{ matrix.test_name }};
           fi