Bulk RNA-seq Workshop

View the workshop material here: https://nhihin.com/Bulk_RNAseq_Workshop

Instructions

1. Ensure that RStudio is installed. Install the renv package by running the following line in the RStudio Console:

install.packages("renv")

2. Download the workshop material by clicking here and unzip the folder.

• Open the Bulk_RNAseq.Rproj file to open the R Project in RStudio.
• Navigate to the analysis folder, and click the de.Rmd file to open up the analysis in RStudio.
• Also, navigate to the docs folder, and click on the de.html file to open up the analysis documentation in a web browser.

3. In the RStudio Console, run the following lines of code to download and install all required packages using renv:

renv::restore(library = "./rlib/")
.libPaths( c( .libPaths(), "./rlib") )

4. You are ready to start running through the workshop material!