updated docs #81
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| name: gtdb_to_taxdump | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| name: build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: miniconda setup | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| mamba-version: "*" | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,bioconda | |
| environment-file: environment.yml | |
| activate-environment: gtdb_to_taxdump | |
| - name: package install | |
| run: | | |
| pip install . | |
| - name: Check Installation | |
| run: | | |
| mamba list | |
| pip list | |
| - name: Script-level tests | |
| run: | | |
| pytest -s --hide-run-results --script-launch-mode=subprocess |