Module: NumBranchSample

The NumBranchSample module chooses the number of viral phylogeny branches to be sampled during a single sampling (i.e., sequencing) event of a given individual in the ContactNetwork. See the source code to see what is defined by the abstract class.

List of Implementations

NumBranchSample_All

• All branches at the given time are sampled
• Requirements:
  • None
• Config Parameters:
  • None

NumBranchSample_Fixed

• A fixed user-specified number of branches are sampled at each given time
• Requirements:
  • None
• Config Parameters:
  • num_viruses_per_cn_sample: The desired number of viral branches to sample at the given time

NumBranchSample_Single

• A single branch is sampled at each given time
• Requirements:
  • None
• Config Parameters:
  • None