Module: NumBranchSample

The NumBranchSample module chooses the number of viral phylogeny branches to be sampled during a single sampling (i.e., sequencing) event of a given individual in the ContactNetwork. See the source code to see what is defined by the abstract class.

List of Implementations

• NumBranchSample_All
  • All branches at the given time are sampled
  • Requirements:
    • None
  • Config Parameters:
    • None
• NumBranchSample_Fixed
  • A fixed user-specified number of branches are sampled at each given time
  • Requirements:
    • None
  • Config Parameters:
    • num_viruses_per_cn_sample: The desired number of viral branches to sample at the given time
• NumBranchSample_Single
  • A single branch is sampled at each given time
  • Requirements:
    • None
  • Config Parameters:
    • None