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DOC: Fix documentation and description for init_bold_grayords_wf #3051

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merged 5 commits into from
Jun 22, 2023
Merged

DOC: Fix documentation and description for init_bold_grayords_wf #3051

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c31a410
DOC: Fix documentation and description for init_bold_grayords_wf
Shotgunosine Jun 22, 2023
4e3e3bc
Update .zenodo.json
Shotgunosine Jun 22, 2023
9917117
Update CONTRIBUTORS.md
Shotgunosine Jun 22, 2023
ee6c7d4
FIX: correct formatting in an attempt to appease black
Shotgunosine Jun 22, 2023
6d2005d
Fix: run black
Shotgunosine Jun 22, 2023
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5 changes: 5 additions & 0 deletions .zenodo.json
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Original file line number Diff line number Diff line change
Expand Up @@ -330,6 +330,11 @@
"name": "Blair, Ross W.",
"orcid": "0000-0003-3007-1056"
},
{
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"affiliation": "Machine Learning Team, National Institute of Mental Health",
"name": "Nielson, Dylan M.",
"orcid": "0000-0003-4613-6643"
},
{
"affiliation": "Department of Psychology, Stanford University",
"name": "Poldrack, Russell A.",
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21 changes: 12 additions & 9 deletions fmriprep/workflows/bold/resampling.py
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Expand Up @@ -1241,19 +1241,20 @@ def init_bold_grayords_wf(
Either ``"91k"`` or ``"170k"``, representing the total *grayordinates*.
mem_gb : :obj:`float`
Size of BOLD file in GB
repetition_time : :obj:`float`
Repetition time in seconds
name : :obj:`str`
Unique name for the subworkflow (default: ``"bold_grayords_wf"``)

Inputs
------
bold_fsLR : :obj:`str`
List of paths to BOLD series resampled as functional GIFTI files in fsLR space
bold_std : :obj:`str`
List of BOLD conversions to standard spaces.
spatial_reference : :obj:`str`
List of unique identifiers corresponding to the BOLD standard-conversions.
surf_files : :obj:`str`
List of BOLD files resampled on the fsaverage (ico7) surfaces.
surf_refs :
List of unique identifiers corresponding to the BOLD surface-conversions.


Outputs
-------
Expand All @@ -1268,16 +1269,18 @@ def init_bold_grayords_wf(
from niworkflows.interfaces.utility import KeySelect

workflow = Workflow(name=name)

mni_density = "2" if grayord_density == "91k" else "1"
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workflow.__desc__ = """\
*Grayordinates* files [@hcppipelines] containing {density} samples were also
generated using the highest-resolution ``fsaverage`` as intermediate standardized
surface space.
generated with surface data transformed directly to fsLR space and subcortical
data transformed to {mni_density} mm resolution MNI152NLin6Asym space.
""".format(
density=grayord_density
density=grayord_density,
mni_density=mni_density
)

mni_density = "2" if grayord_density == "91k" else "1"

inputnode = pe.Node(
niu.IdentityInterface(
fields=[
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