Merge pull request #740 from oesteban/enh/new-feedback

[ENH] New feedback widget
nipreps · Aug 17, 2018 · b8b6f65 · b8b6f65
2 parents 4346477 + 8907acb
commit b8b6f65
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Showing 7 changed files with 216 additions and 167 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -275,7 +275,7 @@ jobs:
                        -v $PWD:/scratch -w /scratch \
                        poldracklab/mriqc:latest \
                        /data derivatives/ participant \
-                       -vv --verbose-reports --profile -m T1w \
+                       -vv --verbose-reports --profile -m T1w --dsname circletests \
                        --n_procs 2 --ants-nthreads 1 --ants-float \
                        --webapi-url http://$( hostname -I | awk '{print $1}' )/api/v1 --upload-strict
       - run:
@@ -385,7 +385,7 @@ jobs:
                        -v $PWD:/scratch -w /scratch \
                        poldracklab/mriqc:latest \
                        /data derivatives/ participant \
-                       -vv --verbose-reports --profile -m bold \
+                       -vv --verbose-reports --profile -m bold --dsname circletests \
                        --n_procs 2 --ants-nthreads 1 --ants-float \
                        --testing --ica \
                        --webapi-url http://$( hostname -I | awk '{print $1}' )/api/v1 --upload-strict

diff --git a/mriqc/bin/mriqc_run.py b/mriqc/bin/mriqc_run.py
@@ -67,6 +67,7 @@ def get_parser():
     g_bids.add_argument('-m', '--modalities', action='store', nargs='*',
                         choices=['T1w', 'bold', 'T2w'], default=['T1w', 'bold', 'T2w'],
                         help='filter input dataset by MRI type ("T1w", "T2w", or "bold")')
+    g_bids.add_argument('--dsname', type=str, help='a dataset name')
 
     # Control instruments
     g_outputs = parser.add_argument_group('Instrumental options')
@@ -86,8 +87,7 @@ def get_parser():
                                 'to MRIQC\'s metrics repository.')
     g_outputs.add_argument('--email', action='store', default='', type=str,
                            help='Email address to include with quality metric submission.')
-    g_outputs.add_argument("-v", "--verbose", dest="verbose_count",
-                           action="count", default=0,
+    g_outputs.add_argument("-v", "--verbose", dest="verbose_count", action="count", default=0,
                            help="increases log verbosity for each occurence, debug level is -vvv")
 
     g_outputs.add_argument(
@@ -348,6 +348,9 @@ def init_mriqc(opts, retval):
     if opts.ants_settings:
         settings['ants_settings'] = opts.ants_settings
 
+    if opts.dsname:
+        settings['dataset_name'] = opts.dsname
+
     log_dir = settings['output_dir'] / 'logs'
 
     # Create directories