From bbbc39ce62e5ae6f0acee3aef92b59d560774a16 Mon Sep 17 00:00:00 2001 From: Patrick Sadil Date: Wed, 16 Aug 2023 15:20:15 -0400 Subject: [PATCH 1/4] DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image Backport gh-357 --- docker/files/freesurfer7.3.2-exclude.txt | 6 ------ 1 file changed, 6 deletions(-) diff --git a/docker/files/freesurfer7.3.2-exclude.txt b/docker/files/freesurfer7.3.2-exclude.txt index a817a062b1..39bd85a7d3 100644 --- a/docker/files/freesurfer7.3.2-exclude.txt +++ b/docker/files/freesurfer7.3.2-exclude.txt @@ -1,9 +1,3 @@ -freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.hdr -freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.ifh -freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img -freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img.rec -freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.mat -freesurfer/average/3T18yoSchwartzReactN32_as_orig.lst freesurfer/average/711-2B_as_mni_average_305.4dfp.hdr freesurfer/average/711-2B_as_mni_average_305.4dfp.ifh freesurfer/average/711-2B_as_mni_average_305.4dfp.img From 609b1ef69fef22ffafe4213cca2a1335a99c0220 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 16 Aug 2023 19:32:19 -0400 Subject: [PATCH 2/4] CI: Use working CircleCI image --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 477952f5d4..070f3e730c 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -4,7 +4,7 @@ _machine_defaults: &machine_defaults TZ: "/usr/share/zoneinfo/America/Los_Angeles" SCRATCH: "/scratch" machine: - image: ubuntu-2204:current + image: ubuntu-2204:2023.04.2 docker_layer_caching: true working_directory: /tmp/src/smriprep resource_class: large From 98545a5810ffd6390860c35e48115c1e35e966c3 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 16 Aug 2023 19:37:27 -0400 Subject: [PATCH 3/4] DOC: Update requirements --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 20f6906786..32245b783f 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -2,7 +2,7 @@ git+https://github.com/AleksandarPetrov/napoleon.git@0dc3f28a309ad602be5f44a9049 git+https://github.com/effigies/sphinxcontrib-versioning.git@master nbsphinx nipype >= 1.5.1 -niworkflows >= 1.4.0, <1.6 +niworkflows >= 1.8.0 packaging pydot sphinx-argparse From 93b0f3f70eecc22890a457d326b2d7282815f4db Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 16 Aug 2023 19:50:02 -0400 Subject: [PATCH 4/4] REL: 0.12.2 --- CHANGES.rst | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/CHANGES.rst b/CHANGES.rst index 296957396a..ea2c4f7a13 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,16 @@ +0.12.2 (August 16, 2023) +======================== +Bug-fix release in the 0.12.x series. + +In rare cases where Freesurfer is unable to align to its default atlas in +Talairach registration, it was unable to fall back to the Schwartz atlas +because we were not including it in the Docker image. This release exists +to provide an updated Docker image, and no upgrade is needed for users not +encountering this issue. + +* DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image (#357) + + 0.12.1 (June 15, 2023) ====================== Bug-fix release in the 0.12.x series.