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# semscholar: interfacing Semantic Scholar search engine with R

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<!-- badges: start -->

[![Travis build
status](https://travis-ci.org/njahn82/semscholar.svg?branch=master)](https://travis-ci.org/njahn82/semscholar)
[![AppVeyor build
status](https://ci.appveyor.com/api/projects/status/github/njahn82/semscholar?branch=master&svg=true)](https://ci.appveyor.com/project/njahn82/semscholar)
[![Lifecycle:
experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)
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This web client wraps the Semantic Scholar RESTful API. [Semantic
Expand Down Expand Up @@ -42,15 +41,14 @@ s2_papers(
"arXiv:0711.0914")
)
#> # A tibble: 4 x 14
#> abstract arxiv_id authors citation_veloci… citations doi
#> <chr> <chr> <list> <int> <list> <chr>
#> 1 T-DNA i… <NA> <tibbl… 15 <tibble … 10.1…
#> 2 T-DNA i… <NA> <tibbl… 15 <tibble … 10.1…
#> 3 Publica… <NA> <tibbl… 0 <tibble … 10.7…
#> 4 Abstrac… 0711.09… <tibbl… 10 <tibble … 10.1…
#> # … with 8 more variables: influential_citation_count <int>,
#> # paper_id <chr>, references <list>, title <chr>, topics <list>,
#> # url <chr>, venue <chr>, year <int>
#> abstract arxiv_id authors citation_veloci… citations doi influential_cit…
#> <chr> <chr> <list> <int> <list> <chr> <int>
#> 1 T-DNA ins… <NA> <tibbl… 31 <tibble … 10.1… 28
#> 2 T-DNA ins… <NA> <tibbl… 31 <tibble … 10.1… 28
#> 3 Publicati… <NA> <tibbl… 8 <tibble … 10.7… 3
#> 4 Abstract … 0711.0914 <tibbl… 16 <tibble … 10.1… 12
#> # … with 7 more variables: paper_id <chr>, references <list>, title <chr>,
#> # topics <list>, url <chr>, venue <chr>, year <int>
```

Authors
Expand All @@ -59,61 +57,62 @@ Authors
s2_papers("14a22b032524573d15593abed170f9f76359e581")$authors
#> [[1]]
#> # A tibble: 5 x 3
#> author_id author_name author_url
#> <chr> <chr> <chr>
#> 1 31697714 Nils Kleinboelting https://www.semanticscholar.org/author/3169…
#> 2 1922491 Gunnar Huep https://www.semanticscholar.org/author/1922…
#> 3 3096048 Andreas Kloetgen https://www.semanticscholar.org/author/3096…
#> 4 3236938 Prisca Viehoever https://www.semanticscholar.org/author/3236…
#> 5 2204561 Bernd Weisshaar https://www.semanticscholar.org/author/2204…
#> author_id author_name author_url
#> <chr> <chr> <chr>
#> 1 2099949665 Nils Kleinboelting https://www.semanticscholar.org/author/20999496…
#> 2 1922491 G. Huep https://www.semanticscholar.org/author/1922491
#> 3 3096048 A. Kloetgen https://www.semanticscholar.org/author/3096048
#> 4 2092957728 Prisca Viehoever https://www.semanticscholar.org/author/20929577…
#> 5 2204561 B. Weisshaar https://www.semanticscholar.org/author/2204561
```

Citations

``` r
s2_papers("14a22b032524573d15593abed170f9f76359e581")$citations
#> [[1]]
#> # A tibble: 143 x 10
#> citations_arxiv… citations_autho… citations_doi citations_intent
#> <lgl> <list> <chr> <list>
#> 1 NA <df[,3] [1 × 3]> <NA> <chr [0]>
#> 2 NA <df[,3] [9 × 3]> 10.1105/tpc.… <chr [0]>
#> 3 NA <df[,3] [8 × 3]> 10.1111/tpj.… <chr [1]>
#> 4 NA <df[,3] [9 × 3]> 10.1007/s107… <chr [1]>
#> 5 NA <df[,3] [9 × 3]> 10.1111/tpj.… <chr [1]>
#> 6 NA <df[,3] [5 × 3]> 10.1016/j.pl… <chr [1]>
#> 7 NA <df[,3] [7 × 3]> 10.1038/s415… <chr [0]>
#> 8 NA <df[,3] [6 × 3]> 10.1104/pp.1… <chr [1]>
#> 9 NA <df[,3] [11 × 3… <NA> <chr [1]>
#> 10 NA <df[,3] [14 × 3… 10.1016/j.cu… <chr [0]>
#> # … with 133 more rows, and 6 more variables:
#> # citations_is_influential <lgl>, citations_paper_id <chr>,
#> # citations_title <chr>, citations_url <chr>, citations_venue <chr>,
#> # citations_year <int>
#> # A tibble: 283 x 10
#> citations_arxiv_id citations_authors citations_doi citations_intent
#> <lgl> <list> <chr> <list>
#> 1 NA <df [3 × 2]> 10.1101/2021.01.06.425… <chr [1]>
#> 2 NA <df [5 × 2]> 10.1186/s12870-021-030… <chr [0]>
#> 3 NA <df [3 × 2]> 10.1101/2021.03.03.433… <chr [1]>
#> 4 NA <df [5 × 2]> 10.3389/fpls.2021.6286… <chr [0]>
#> 5 NA <df [5 × 2]> 10.1101/2021.06.03.446… <chr [0]>
#> 6 NA <df [5 × 2]> 10.1101/2021.02.17.431… <chr [0]>
#> 7 NA <df [12 × 2]> 10.1038/s41467-020-205… <chr [0]>
#> 8 NA <df [3 × 2]> 10.3389/fpls.2021.6524… <chr [1]>
#> 9 NA <df [13 × 2]> 10.1101/2021.01.28.428… <chr [1]>
#> 10 NA <df [12 × 2]> 10.1101/2020.04.02.021… <chr [1]>
#> # … with 273 more rows, and 6 more variables: citations_is_influential <lgl>,
#> # citations_paper_id <chr>, citations_title <chr>, citations_url <chr>,
#> # citations_venue <chr>, citations_year <int>
```

References

``` r
s2_papers("14a22b032524573d15593abed170f9f76359e581")$references
#> [[1]]
#> # A tibble: 11 x 10
#> references_arxi… references_auth… references_doi references_inte…
#> <lgl> <list> <chr> <list>
#> 1 NA <df[,3] [4 × 3]> 10.1093/nar/g… <chr [3]>
#> 2 NA <df[,3] [12 × 3… 10.1104/pp.10… <chr [1]>
#> 3 NA <df[,3] [16 × 3… 10.1093/nar/g… <chr [1]>
#> 4 NA <df[,3] [6 × 3]> 10.1023/B:PLA… <chr [1]>
#> 5 NA <df[,3] [3 × 3]> 10.1093/nar/2… <chr [1]>
#> 6 NA <df[,3] [7 × 3]> 10.1093/nar/2… <chr [0]>
#> 7 NA <df[,3] [7 × 3]> 10.1093/nar/g… <chr [1]>
#> 8 NA <df[,3] [2 × 3]> 10.1111/j.136… <chr [1]>
#> 9 NA <df[,3] [6 × 3]> 10.2144/03356… <chr [1]>
#> 10 NA <df[,3] [39 × 3… 10.1126/scien… <chr [2]>
#> 11 NA <df[,3] [5 × 3]> 10.1093/bioin… <chr [1]>
#> # A tibble: 13 x 10
#> references_arxiv_… references_autho… references_doi references_inte…
#> <lgl> <list> <chr> <list>
#> 1 NA <df [4 × 2]> 10.1093/nar/gkl753 <chr [3]>
#> 2 NA <df [1 × 2]> 10.1038/35048692 <chr [0]>
#> 3 NA <df [2 × 2]> 10.1111/j.1365-313X.20… <chr [1]>
#> 4 NA <df [7 × 2]> 10.1093/NAR/GKH134 <chr [1]>
#> 5 NA <df [3 × 2]> 10.1385/1-59259-192-2:… <chr [0]>
#> 6 NA <df [3 × 2]> 10.1093/NAR/23.24.4992 <chr [1]>
#> 7 NA <df [1 × 2]> <NA> <chr [0]>
#> 8 NA <df [12 × 2]> 10.1104/pp.103.022251 <chr [1]>
#> 9 NA <df [5 × 2]> 10.1093/bioinformatics… <chr [0]>
#> 10 NA <df [39 × 2]> 10.1126/SCIENCE.1086391 <chr [2]>
#> 11 NA <df [6 × 2]> 10.2144/03356ST01 <chr [0]>
#> 12 NA <df [6 × 2]> 10.1023/B:PLAN.0000009… <chr [1]>
#> 13 NA <df [16 × 2]> 10.1093/nar/gkm965 <chr [1]>
#> # … with 6 more variables: references_is_influential <lgl>,
#> # references_paper_id <chr>, references_title <chr>,
#> # references_url <chr>, references_venue <chr>, references_year <int>
#> # references_paper_id <chr>, references_title <chr>, references_url <chr>,
#> # references_venue <chr>, references_year <int>
```

Topics
Expand All @@ -122,34 +121,33 @@ Topics
s2_papers("14a22b032524573d15593abed170f9f76359e581")$topics
#> [[1]]
#> # A tibble: 13 x 3
#> topic topic_id topic_url
#> <chr> <chr> <chr>
#> 1 KickassTorrents 2106063 https://www.semanticscholar.org/topic…
#> 2 Gabi software 1885631 https://www.semanticscholar.org/topic…
#> 3 Index 35133 https://www.semanticscholar.org/topic…
#> 4 Clinical act of inserti… 2803 https://www.semanticscholar.org/topic…
#> 5 KAT 250 7277553 https://www.semanticscholar.org/topic…
#> 6 Reverse Genetics 21005 https://www.semanticscholar.org/topic…
#> 7 Annotation 37540 https://www.semanticscholar.org/topic…
#> 8 Silo (dataset) 130506 https://www.semanticscholar.org/topic…
#> 9 fostriecin 5652 https://www.semanticscholar.org/topic…
#> 10 DNA Sequence - Cloning … 653134 https://www.semanticscholar.org/topic…
#> 11 Collections (publicatio… 23835 https://www.semanticscholar.org/topic…
#> 12 Nuclear Proteins 252416 https://www.semanticscholar.org/topic…
#> 13 Insertion Mutation 999582 https://www.semanticscholar.org/topic…
#> topic topic_id topic_url
#> <chr> <chr> <chr>
#> 1 KickassTorrents 2106063 https://www.semanticscholar.org/topic/21…
#> 2 Gabi software 1885631 https://www.semanticscholar.org/topic/18…
#> 3 Index 35133 https://www.semanticscholar.org/topic/35…
#> 4 Clinical act of insertion 2803 https://www.semanticscholar.org/topic/28…
#> 5 KAT 250 7277553 https://www.semanticscholar.org/topic/72…
#> 6 Reverse Genetics 21005 https://www.semanticscholar.org/topic/21…
#> 7 Annotation 37540 https://www.semanticscholar.org/topic/37…
#> 8 Silo (dataset) 130506 https://www.semanticscholar.org/topic/13…
#> 9 fostriecin 5652 https://www.semanticscholar.org/topic/56…
#> 10 DNA Sequence - Cloning Si… 653134 https://www.semanticscholar.org/topic/65…
#> 11 Collections (publication) 23835 https://www.semanticscholar.org/topic/23…
#> 12 Nuclear Proteins 252416 https://www.semanticscholar.org/topic/25…
#> 13 Insertion Mutation 999582 https://www.semanticscholar.org/topic/99…
```

## Author Lookup

Provide one or many S2 Author IDs to obtain a personal publication
profile
Provide one or many S2 Author IDs

``` r
s2_authors(c("2204561", "144128278", "49930593"))
#> # A tibble: 3 x 6
#> aliases author_id author_name author_url influential_cita… papers
#> <list> <chr> <chr> <chr> <int> <list>
#> 1 <chr [2… 2204561 Bernd Weiss… https://www.se… 1490 <df[,4…
#> 2 <chr [7… 144128278 György Buzs… https://www.se… 3348 <df[,4…
#> 3 <chr [1… 49930593 Maëlle Salm… https://www.se… 4 <df[,4…
#> aliases author_id author_name author_url influential_citat… papers
#> <list> <chr> <chr> <chr> <int> <list>
#> 1 <chr [3… 2204561 B. Weisshaar https://www.semant… 1891 <df [2…
#> 2 <chr [1… 144128278 G. Buzsáki https://www.semant… 4088 <df [4…
#> 3 <chr [2… 49930593 M. Salmon https://www.semant… 5 <df [3…
```

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