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1. ecc_finder ecc_finder Public

   a tool to detect eccDNA using Illumina and ONT sequencing

   Python 14 5

2. SASAR SASAR Public

   SASAR is a meta-assembly tool to reconcile different assemblies without reference.

   Python

3. TIP-detection TIP-detection Public

   Detect transposon insertion polymorphisms by TRACKPOSON

   Shell 2

4. CIGAR_SV CIGAR_SV Public

   Detect TE insertion polymorphisms from long reads using CIGAR

   Python

5. TRANSPOSE TRANSPOSE Public

   Transposable elements annotation for large genomes

   Perl 1 1

6. eccDNA-Genome eccDNA-Genome Public