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covr.yaml
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on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
name: test-coverage
jobs:
test-coverage:
runs-on: ubuntu-20.04
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-pandoc@v1
- uses: r-lib/actions/setup-tinytex@v1
- name: Install packages from cran (source)
run: |
install.packages('remotes')
install.packages("jsonlite", type="source")
install.packages("usethis", type="source")
install.packages("symengine", type="source")
remotes::install_cran("covr")
shell: Rscript {0}
- name: Query dependencies
run: |
install.packages('remotes')
remotes::install_github("nlmixrdevelopment/dparser-R")
remotes::install_cran("stringi")
remotes::install_github("https://github.com/symengine/symengine.R")
shell: Rscript {0}
- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_github("nlmixrdevelopment/dparser-R")
shell: Rscript {0}
- name: Test coverage
run: |
options(covr.flags = c(CFLAGS = "-O0 --coverage", CXXFLAGS = "-O0 --coverage", LDFLAGS = "--coverage"))
pkgbuild::with_build_tools(covr::codecov(token="c1a47ffb-e5b5-420a-a0ed-6df480bcb833", quiet=FALSE))
shell: Rscript {0}