Skip to content

Comparison of single-cell normalization methods using multiple datasets with ground-truth labels

License

Notifications You must be signed in to change notification settings

normjam/benchmark

Repository files navigation

Benchmark

Usage

This repository defines a docker environment that contains R and Python kernels with the dependencies required to run the benchmarking scripts. R dependencies are installed by packages.R and python dependencies are listed in requirements.txt

Build Docker

Install Docker. Run, from the root of the repository:

> docker build -t normjam -f Dockerfile .

Use container

When docker is installed on your system, the following command will drop you into a bash shell that exposes R & python installed.

> docker run -it normjam

About

Comparison of single-cell normalization methods using multiple datasets with ground-truth labels

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published