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<!DOCTYPE html>
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<title>NRNB: Mentored Alumni</title>
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<div class="belt white">
<div class="container">
<ul class="nav nav-tabs" id="tabs">
<li class="active"><a href="#academy-tab" data-toggle="tab">NRNB Academy</a></li>
<li><a href="#gsoc-tab" data-toggle="tab">GSoC</a></li>
</ul>
<div class="tab-content">
<div class="tab-pane active" id="academy-tab">
<a class="btn btn-info btn-mini pull-right" href="gsoc.html">Back to Academy</a>
<!--<a name="NRNBEnrolled"></a>
<h3>NRNB Enrolled Students</h3> -->
<h3>NRNB Academy Alumni</h3>
<dl>
<a name="2018SummerSessionAlumni"></a>
<h4>Summer Session 2018</h4>
<dt><b>Mohamed Elattma</b> - University of California Santa Cruz, Santa Cruz, CA </dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2018mohamed_elattma" target="_blank">boundaryLayout Revamp</a>
<br>Mentored by Scooter Morris</dd>
<h4>2016</h4>
<dt> <b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia</dt>
<dd><a href="https://github.com/gabrielet/application" target="_blank">Random networks for CentiScaPe</a>
<br>Mentored by Gabriele Tosadori</dd>
<dt><b>Aarya Venkat</b> - University of California San Diego, San Diego, CA </dt>
<dd><a href="https://github.com/HelloAarya/cytoscape-pathways">Modeling the Effects of Small Molecule Binders on Pathways in Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<a name="2015SummerSessionAlumni"></a>
<h4>Summer Session 2015</h4>
<dt><b>Vijay Dhameliya</b> - Dhirubhai Ambani Institute of Information and Communication Technology,
Gandhinagar, India</dt>
<dd><a href="https://github.com/nrnb/clusterMaker2" target="_blank">Adding PCA to clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt> <b>Matthias König</b> - Charité Universitätsmedizin Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/cy3sbml" target="_blank">Cy3SBML: Make CySBML a Cytoscape 3 app</a>
<br>Mentored by Andreas Dräger and Nicolas Rodriguez</dd>
<dt><b>Sakshi Pratap</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2015sakshi" target="_blank">CentiScaPe for multiple networks analysis and graphical output enhancement</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Metin Can Siper</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/sbgnviz-js" target="_blank">Improving Cytoscape.js-based viewer for SBGN process description diagrams with better layout and advanced complexity management operations</a>
<br>Mentored by Uğur Doğrusöz and Onur Sümer</dd>
<h4>2015</h4>
<dt>
<b>Vijay Dhameliya</b> - Dhirubhai Ambani Institute of Information and Communication Technology,
Gandhinagar, India
</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2014vijay" target="_blank">Network animation tools</a>
<br>Mentored by Scooter Morris</dd>
<h4>2013</h4>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, Missouri
</dt>
<dd><a href="https://github.com/nrnb/gsoc2012chao" target="_blank">NOA and Avalon Cytoscape plugins for visualization and
analysis of ontology-annotated networks</a>
<br>Mentored by Alexander Pico</dd>
<h4>2012</h4>
<dt>
<b>Sravanthi Rani Sinha</b> - KMIT, Hyderabad, India
</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2012sravanthi" target="_blank">Develop a stoichiometry plugin for SBGN in PathVisio</a>
<br>Mentored by Martijn van Iersel</dd>
</dl>
</div>
<div class="tab-pane" id="gsoc-tab">
<a class="btn btn-info btn-mini pull-right" href="gsoc.html">Back
to GSoC</a>
<h3>NRNB GSoC Alumni</h3>
<p>
<i><b>We have mentored a total of 197 successfully completed projects by
165 unique students with an overall success rate of 96%</b></i>
</p>
<p class="text-success">2024 (11/11 passing students, 100%) </p>
<dl>
<dt><b>Tushar Choudhary</b> - BITS Pilani, Pilani, India</dt>
<dd><a href="https://github.com/tushar-c23/CytoJSLayout/wiki" target="_blank">Cytoscape layout plugin to support Cytoscape.js layouts</a>
<br>Mentored by Hasan Balci</dd>
<dt><b>Umut Utku Erşahince</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://umut-er.github.io/posts/my-contributions-to-the-newt-project/" target="_blank">Machine Learning Support for Constructing Newt SBGN Maps</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Johan Guillen</b> - Brightmont Academy, Seattle, USA</dt>
<dd><a href="https://jguillen15.github.io/" target="_blank">Integration of complexity score functions into the iGEM DNA kit distribution workflow</a>
<br>Mentored by Gonzalo Vidal</dd>
<dt><b>Favour James</b> - Obafemi Awolowo University, Ife, Nigeria</dt>
<dd><a href="https://github.com/ndexbio/gsoc_llm" target="_blank">Large Language Model-based creation of knowledge graph from a publication</a>
<br>Mentored by Dexter Pratt</dd>
<dt><b>Vishnu Madhav</b> - Institute of Bioinformatics and Applied Biotechnology, Bangalore, India</dt>
<dd><a href="https://gist.github.com/code-bele/59a3df1a6bb39cc697a4e3fe3a8d9169" target="_blank">Integration of GRN inference algorithms using single cell multi-omics data to BEELINE</a>
<br>Mentored by Yiqi Su</dd>
<dt><b>Luca Milazzo</b> - Università degli studi di Milano-Bicocca, Milan, Italy</dt>
<dd><a href="https://toolshed.g2.bx.psu.edu/repos/bimib/marea_2/file/default/marea_2" target="_blank">COBRAxy: COBRA and MaREA4Galaxy</a>
<br>Mentored by Chiara Damiani</dd>
<dt><b>Nada Mohamed</b> - Università degli studi di Milano-Bicocca, Milan, Italy</dt>
<dd><a href="https://drive.google.com/file/d/1osF48I1BQfKO7Bw2rn9qq8-LByAiw3_1/view?usp=drive_link" target="_blank">ASCETIC 2.0</a>
<br>Mentored by Daniele Ramazzotti</dd>
<dt><b>Deep Poharkar</b> - Pimpri Chinchwad College Of Engineering, Pune, India</dt>
<dd><a href="https://gist.github.com/deep-poharkar/67d22ed4c32dd7713097b4ec283e707e" target="_blank">Implement AWS DevOps Pipeline for Image Deployment for Graphspace</a>
<br>Mentored by Mahesh Kasbe</dd>
<dt><b>Faizal Rahman</b> - Jawaharlal Nehru University, New Dehli, India</dt>
<dd><a href="https://faizaljnu.github.io/GSoC24-FinalReport/" target="_blank">Using Foundation Model: scGPT for Gene Regulatory Network Inference</a>
<br>Mentored by Nure Tasnina</dd>
<dt><b>Aditya Saini</b> - ABES Engineering College, Ghaziabad, India</dt>
<dd><a href="https://gist.github.com/SainiAditya1/90e96e09bad684fdc5734a186c233165" target="_blank">GPML support in Newt</a>
<br>Mentored by Hasan Balci</dd>
<dt><b>Mohamed Soudy</b> - University of Luxembourg, Luxembourg, Belgium</dt>
<dd><a href="https://medium.com/@mohmedsoudy77/google-summer-of-code-2024-openpip-work-report-b30d02d6f786" target="_blank">Improvement Of openPIP (Data upload and Visualization)</a>
<br>Mentored by Mohamed Helmy</dd>
</dl>
<p class="text-success">2023 (8/8 passing students, 100%) </p>
<dl>
<dt><b>Siddharth Chaudhary</b> - The LNM Institute Of Information Technology, India</dt>
<dd><a href="https://github.com/sidd-2203/cellminercdb/tree/GSoC-Staging" target="_blank">Implement a R shiny module for Network Analysis in CellMinerCDB</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Jigyasa Gupta</b> - Dayananda Sagar College of Engineering, Bangalore, India</dt>
<dd><a href="https://gist.github.com/Jigyasa-G/543d3a96463308479bb86aa866323391" target="_blank">Supporting Pathway Commons and ssGSEA in clusterProfiler</a>
<br>Mentored by Guangchuang Yu</dd>
<dt><b>Favour James</b> - Obafemi Awolowo University, Ife, Nigeria</dt>
<dd><a href="https://github.com/cannin/gsoc_2023_pytorch_pathway_commons/blob/main/docs/_reports/Final%20Report%20of%20GSoC%202023.pdf" target="_blank">Generate Example Dataset for PyTorch Geometric Based on Pathway Commons and Prototype</a>
<br>Mentored by Yoshitaka Inoue</dd>
<dt><b>Mahesh Kasbe</b> - Bhavans College, Mumbai India</dt>
<dd><a href="https://github.com/maheshkasabe/GraphSpace" target="_blank">Setting up the CI/CD Pipeline using Github Actions on GraphSpace</a>
<br>Mentored by Yash Agrawal</dd>
<dt><b>Ermis Delopoulos</b> - Katholieke Universiteit Leuven, Leuven, Belgium</dt>
<dd><a href="https://ermismd.github.io/MGG/" target="_blank">Development of a Cytoscape App for microbe-microbe association networks</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Akash Mondal</b> - The LNM Institute Of Information Technology, India</dt>
<dd><a href="https://github.com/AkMo3/cytoscape.js-blog" target="_blank">Automate Cytoscape.js release process using GitHub Actions</a>
<br>Mentored by Max Franz</dd>
<dt><b>Phuc Nguyen</b> - University of Cincinnati, Cincinnati, OH, USA</dt>
<dd><a href="https://github.com/sanderlab/CellBox" target="_blank">Convert CellBox code from Tensorflow to Pytorch</a>
<br>Mentored by Bo Yuan</dd>
<dt><b>Kartik Kumar Pawar</b> - Jawaharlal Nehru University, New Dehli, India</dt>
<dd><a href="https://github.com/RBVI/CyPlot/tree/Develop-Kartik" target="_blank">Develop new features for Cytoscape App - cyPlot</a>
<br>Mentored by Yihang Xin</dd>
</dl>
<p class="text-success">2022 (8/10 passing students, 80%) </p>
<dl>
<dt><b>Selbi Ereshova</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://docs.google.com/document/d/17Yp1YPOVLc3PJYNRKO9FeCiH_bzyK8rVv08jGs3ilyQ/edit" target="_blank">SBML-MINERVA support in Newt</a>
<br>Mentored by Alexander Mazein</dd>
<dt><b>Yoshitaka Inoue</b> - University of Minnesota, MN, USA</dt>
<dd><a href="https://github.com/cannin/graph_neural_network_drug_response/blob/main/docs/_reports/GSoC_final_report.md" target="_blank">Create a Pipeline from data extraction to execution of GNN based Drug Response Prediction</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Sara Jovanovska</b> - Utrecht University, Utrecht, The Netherlands</dt>
<dd><a href="https://sajo25.github.io/netboxr/" target="_blank">NetBoxR Updates</a>
<br>Mentored by Eric Liu</dd>
<dt><b>Mohit Makwana</b> - Birla Institute of Technology and Science, Mumbai, India</dt>
<dd><a href="https://github.com/SynBioDex/SBOL-utilities/pull/186" target="_blank">Conversion between GenBank and SBOL3</a>
<br>Mentored by Tom Mitchell</dd>
<dt><b>Akash Mondal</b> - The LNM Institute Of Information Technology, Jaipur, India</dt>
<dd><a href="https://gist.github.com/AkMo3/260b155ffc095ed52e1beccaa318cbe0" target="_blank">Updates to the Enrichment Table App</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Aniket Ranjan</b> - Indian Institute of Technology, Kharagpur, India</dt>
<dd><a href="https://github.com/cannin/graph_neural_network_drug_response/blob/main/docs/_reports/GSoC_final_report.md" target="_blank">Adding visualization of protein-complex interaction to OpenPIP</a>
<br>Mentored by Gary Bader</dd>
<dt><b>Fizza Rubab</b> - Habib University, Karachi, Pakistan</dt>
<dd><a href="https://medium.com/@fizza.rubab/google-summer-of-code-2022-cloud-copasi-nrnb-6308ef05edb2" target="_blank">Cloud-COPASI</a>
<br>Mentored by Hasan Baig</dd>
<dt><b>Aditya Singhal</b> - Lakehead University, Thunder Bay, Canada</dt>
<dd><a href="https://github.com/combine-org/combine-notebooks" target="_blank">Create Jupyter Notebooks showcasing COMBINE Standards</a>
<br>Mentored by Matthias König</dd>
</dl>
<p class="text-success">2021 (13/14 passing students, 93%) </p>
<dl>
<dt><b>Javed Ali</b> - Indian Institute of Technology Kharagpur, Dehli, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021javed_ali" target="_blank">Adding analysis report and Direct import from GEO databases to ABioTrans Plus</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Can Alpay</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2021can_alpay" target="_blank">PD to AF conversion facility in Newt</a>
<br>Mentored by Alexander Mazein</dd>
<dt><b>Pranav Ballaney</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pranav_ballaney" target="_blank">SBML Simulator in Rust</a><br />
<a href="https://pranavballaney.blogspot.com/" target="_blank">Pranav's blog</a>
<br>Mentored by Akito Tabira</dd>
<dt><b>Sankha Das</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021sankha_das" target="_blank">SBML4Humans - Interactive SBML Report for Humans</a><br />
<a href="https://sbml4humans-gsoc-2021.blogspot.com/" target="_blank">Sankha's blog</a>
<br>Mentored by Matthias König</dd>
<dt><b>Indraneel Ghosh</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021indraneel_ghosh" target="_blank">Simple Enrichment Tool for Analysis</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Siras Hakobyan</b> - Institute of Molecular Biology NAS RA, Yerevan, Armenia</dt>
<dd><a href="https://github.com/nrnb/gsoc2021siras_hakobyan" target="_blank">TumorComparer, updated version</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Noah Liguori-Bills</b> - The University of Connecticut, CT, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2021noah_liguori-bills" target="_blank">Expand ModelBricks.org and VCell API</a>
<br>Mentored by Michael Blinov</dd>
<dt><b>Nikita Mahoviya</b> - National Institute of Technology Hamirpur, Lucknow, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021nikita_mahoviya" target="_blank">Develop GUI for ImageJ groovy script calling VCell API</a><br />
<a href="https://nrnb-gsoc21.blogspot.com/" target="_blank">Nikita's blog</a>
<br>Mentored by Anne Cowan</dd>
<dt><b>Aniket Ranjan</b> - Indian Institute of Technology Kharagpur, Kharagpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021aniket_ranjan" target="_blank">Enhancing the admin panel of openPIP</a>
<br>Mentored by Gary Bader</dd>
<dt><b>Pritam Saha</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pritam_saha" target="_blank">Develop a Cytoscape App for the Casual Path Algorithm</a>
<br>Mentored by Ozgun Babur</dd>
<dt><b>Mohmed Soudy</b> - Ain Shams University, Cairo, Egypt</dt>
<dd><a href="https://github.com/nrnb/gsoc2021mohmed_soudy" target="_blank">Adding Multi-omics data support to ABioTrans Plus</a><br />
<a href="https://medium.com/@mohmedsoudy77/google-summer-of-code-2021-work-report-43e9d73b03bb" target="_blank">Mohmed's blog</a>
<br>Mentored by Thuy Tien Bui</dd>
<dt><b>Maija Utriainen</b> - Maastricht University, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2021maija_utriainen" target="_blank">Implementing multiple clustering algorithms and dimensionality reduction techniques on clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Pankaj Yadav</b> - Indian Institute of Technology, Varanasi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pankaj_yadav" target="_blank">Local DB support for SBGN maps in Newt</a>
<br>Mentored by Uğur Doğrusöz</dd>
</dl>
<p class="text-success">2020 (15/15 passing students, 100%) </p>
<dl>
<dt><b>Rahul Agrawal</b> - Indian Institute of Technology, Kharagpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020rahul_agrawal" target="_blank">Adding Network Analysis and Visualisation Features to ABioTrans</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Yash Agrawal</b> - Indian Institute of Technology, Guwahati, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020yash_agrawal" target="_blank">Implement a comment/discussion system in GraphSpace</a>
<a href="https://yashgsoc2020graphspace.blogspot.com/" target="_blank">Yash's blog</a>
<br>Mentored by Daniyal Jahan</dd>
<dt><b>Medha Bhattacharya</b> - Indira Gandhi Delhi Technical University for Women, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020medha_bhattacharya" target="_blank">Development of a system that generates spatial SBML models using deep learning</a><br />
<a href="https://docs.google.com/document/d/1SbEAJ45XClPG57L4TEGGds2H71Pwnhr3um2B09u1rG0/edit" target="_blank">Medha's blog</a>
<br>Mentored by Akira Funahashi</dd>
<dt><b>Sahil Jha</b> - Amity university, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020sahil_jha" target="_blank">Improving compmodelmatch.org</a>
<a href="https://medium.com/stray-stream" target="_blank">Sahil's blog</a>
<br>Mentored by Michael Blinov</dd>
<dt><b>Merve Kılıçarslan</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2020merve_kilicarslan" target="_blank">Enhancing PathwayMapper in cBioPortal and PathwayMapper editor</a>
<a href="https://docs.google.com/document/d/1AaGF7OFiccEPykvE5y-3TdjbSD7NhHsjWx2kpGGvhrk/edit" target="_blank">Merve's blog</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Alice Meng</b> - Zhejiang University, Hangzhou, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2020alice_meng" target="_blank">Integration of sequence visualization into SynBioHub</a><br />
<a href="https://medium.com/@alice.menglh/gsoc-2020-integration-of-sequence-visualization-into-synbiohub-bca7c0ae195" target="_blank">Alice's blog</a>
<br>Mentored by Geoff Baldwin</dd>
<dt><b>Bhavesh Narra</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020bhavesh_narra" target="_blank">LACE-View : A Visualizer for Longitudinal Clonal Trees</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Hemil Panchiwala</b> - Indian Institute of Technology Roorkee, Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020hemil_panchiwala" target="_blank">Simulation of systems biology models in Java: support for new features</a>
<a href="https://gsoc20hemil.blogspot.com/" target="_blank">Hemil's blog</a>
<br>Mentored by Andreas Dräger</dd>
<dt><b>Isabel Pötzsch</b> - University of Cambridge, Wiesbaden, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2020isabel_potzsch" target="_blank">Spreadsheet Plug-in for SynBioHub</a>
<a href="https://medium.com/@IsaMarleen" target="_blank">Isabel's blog</a>
<br>Mentored by Jet Mante</dd>
<dt><b>Saksham Raghuvanshi</b> - JSS Academy of Technical Education, Noida, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020saksham_raghuvanshi" target="_blank">Redevelop Model Bricks code base architecture</a>
<br>Mentored by Frank Morgan</dd>
<dt><b>Debashish Roy</b> - Jabalpur Engineering College, Jabalpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020debashish_roy" target="_blank">Developing an Optimization Library for libRoadRunner</a>
<a href="https://debashish98.blogspot.com/" target="_blank">Debashish's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Mudasir Shaikh</b> - Habib University, Karachi, Pakistan</dt>
<dd><a href="https://github.com/nrnb/gsoc2020mudasir_shaikh" target="_blank">Generating detailed SBOL representation of genetic logic circuits along with improved designing capability, and SBML export in GeneTech</a>
<a href="https://ms03831.github.io/GSoC-20/final-report-gsoc20-genetech/" target="_blank">Mudasir's blog</a>
<br>Mentored by Hasan Baig</dd>
<dt><b>Priti Shaw</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020priti_shaw" target="_blank">Enhance Web Interface for Natural-Language Processing Extracted Interaction Network</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Maija Utriainen</b> - Maastricht University, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2020maija_utriainen" target="_blank">Implementing R-MCL, ML-MCL, Louvain and Leiden clustering algorithms to Cytoscape app ClusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Hemant Yadav</b> - Indian Institute of Technology Roorkee, Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020hemant_yadav" target="_blank">Implementation of SBML-JSON converter and SBML-JSON scheme</a>
<a href="https://hemant-gsoc2020.blogspot.com/" target="_blank">Hemant's blog</a>
<br>Mentored by Matthias König</dd>
</dl>
<p class="text-success">2019 (11/11 passing students, 100%) </p>
<dl>
<dt><b>Perman Atayev</b> - Bilkent university, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Perman_Atayev" target="_blank">CiSE layout as a Cytoscape.js extension and an automated layout web service for popular Cytoscape.js layout extensions</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Manas Awasthi</b> - Cluster Innovation Centre, University of Delhi, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Manas_Awasthi" target="_blank">BridgeDb Major Release</a>
<br>Mentored by Egon Willighagen</dd>
<dt><b>Rohit R. Chattopadhyay</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019rohit_chattopadhyay" target="_blank">Web Interface for NLP Extracted Interaction Network</a><br />
<a href="https://cannin.github.io/ihop-reach/" target="_blank">Rohit's blog</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Nikhil Ghodke</b> - Vishwakarma Institute of Technology, Pune, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019nikhil_ghodke" target="_blank">New Build System for Insilico</a><br />
<a href="https://medium.com/@nikhilghodke1210" target="_blank">Nikhil's blog</a>
<br>Mentored by Roman Schulte</dd>
<dt><b>Daniyal Jahan</b> - Technische Universität Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2019daniyal_jahan" target="_blank">GraphSpace: Diff for Graphs</a>
<br>Mentored by T.M. Murali</dd>
<dt><b>Bhavye Jain</b> - Indian Institute of Technology, Roorkee, India</dt>
<dd><a href="https://github.com/bhavyejain/jsbml" target="_blank">Validation of spatial systems biology models in Java</a><br />
<a href="https://gsoc19-spatial.blogspot.com/" target="_blank">Bhavye's blog</a>
<br>Mentored by Nicolas Rodiguez</dd>
<dt><b>Ayush Ranjan Lohani</b> - Indian Institute of Engineering Science And Technology, Shibpur, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019ayush_lohani" target="_blank">Implement a machine-readable graph legend interface</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt><b>Debashish Roy</b> - Jabalpur Engineering College, Katni, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019debashish_roy" target="_blank">Integrating RRPlugins with libRoadRunner and devloping Differential Evolution optimizer plugin</a><br />
<a href="https://debashish98.blogspot.com/" target="_blank">Debashish's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Robin Simonot</b> - Université de Nantes, Paris, France</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Robin_Simonot" target="_blank">Simulator for Systems Biology</a>
<br>Mentored by Akira Funahashi</dd>
<dt><b>Sarthak Srivastava</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018gsoc2019sarthak_srivastava" target="_blank">App Store for Cytoscape Apps</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Kaustubh Trivedi</b> - Indian Institute of Technology - Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019kaustubh_trivedi" target="_blank">Extending ModelPolisher to a universal model annotation tool</a>
<br>Mentored by Matthias König</dd>
</dl>
<p class="text-success">2018 (10/10 passing students, 100%) </p>
<dl>
<dt><b>Dara Akdag</b> - Maastricht University, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2018dara_akdag" target="_blank">Upgrading ontology tagging at WikiPathways</a>
<br>Mentored by Martina Kutmon</dd>
<dt><b>Vineeth Chelur</b> - International Institute of Information Technology(IIIT), Hyderabad, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018vineeth_chelur" target="_blank">Implement SBML array support in libRoadRunner</a><br />
<a href="https://crvineeth97.github.io/" target="_blank">Vineeth's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Daniyal Jahan</b> - Technical University of Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2018daniyal" target="_blank">Git for Graphs</a><br />
<a href="https://daniyaljw.blogspot.com" target="_blank">Daniyal's blog</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt><b>Sunwoo Kang</b> - Stanford University of Berlin, Stanford, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2018sunwoo_kang" target="_blank">Rendering complex genetic designs with dnaplotlib for a beautiful visualization of genetic circuits</a><br />
<a href="https://precisionhealthblog.wordpress.com/" target="_blank">Sunwoo's blog</a>
<br>Mentored by Bryan Bartley</dd>
<dt><b>Lucrezia Patruno</b> - University of Milano-Bicocca, Milan, Italy</dt>
<dd><a href="https://github.com/nrnb/gsoc2018lucrezia_patruno" target="_blank">cyTRON/JS: a backend and a cytoscape.js visualizer for cancer progression models</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Kaan Sancak</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/iVis-at-Bilkent/pathway-mapper">PathwayMapper improvements and integration into cBioPortal</a><br />
<a href="https://docs.google.com/document/d/1JX_TQpZujgXMBA5T4xvceIm_qu-iVNQ4hzJTZHUqQIk/edit">Kaan's blog</a>
<br>Mentored by Onur Sumer</dd>
<dt><b>Shalin Shah</b> - Duke University, Durham, NC, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2018shalin" target="_blank">Simulating systems biology models in Java</a><br />
<a href="https://ssdoesgsoc.wordpress.com/" target="_blank">Shalin's blog</a>
<br>Mentored by Andreas Drager</dd>
<dt><b>Prem Prakash Singh</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><b>Integrating CAD and CAM tools for automating a synthetic biology workflow</b><br />
<a href="https://github.com/nrnb/gsoc2018prem_prakash_singh-1" target="_blank">Prem's GitHub 1</a> /
<a href="https://github.com/nrnb/gsoc2018prem_prakash_singh-2">Prem's GitHub 2</a> /
<a href="https://medium.com/integration-of-sboldesigner-with-boost" target="_blank">Prem's blog</a>
<br>Mentored by Ernst Oberortner</dd>
<dt><b>Sarthak Srivastava</b> - Birla Institute of Technology and Sciences, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018sarthak_srivastava" target="_blank">App Store for Cytoscape Apps</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Ahmet Çandıroğlu</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/iVis-at-Bilkent/newt" target="_blank">Improvements for Newt, a Cytoscape.js based SBGN editor</a><br />
<a href="https://docs.google.com/document/d/1b0ifeWThTduHsaTv0E6HlqS5u2Ay-mb1GXe-p9ILf8s/edit" target="_blank">Ahmet's blog</a>
<br>Mentored by Uğur Doğrusöz</dd>
</dl>
<p class="text-success">2017 (20/20 passing students, 100%) </p>
<dl>
<dt><b>Shaik Asifullah</b> - BITS Pilani, Goa, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017shaik_asifullah" target="_blank">Developing a Cluster Computing Framework for Dynamical Modeling</a><br/>
<a href="https://medium.com/@s.asifullah7/a-never-ending-journey-58b33da05409" target="_blank">Shaik's blog</a>
<br>Mentored by Kyle Medley</dd>
<dt><b>Hasan Balcı</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2017hasan_balci" target="_blank">Cytoscape.js Extension for Querying Large Networks</a><br />
<a href="https://docs.google.com/document/d/1Le_tQxiBct3Z6wIvD7azYkh5XjpCOvYEaEb-rV1ifSI/edit" target="_blank">Hasan's blog</a>
<br>Mentored by Ozgun Babur</dd>
<dt><b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017ivan_bestvina" target="_blank">Implement Network Quantity Information measure in CentiScaPe</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Peter Dun</b> - Stanford University, Palo Alto, US</dt>
<dd><a href="https://github.com/nrnb/gsoc2017peter_dun" target="_blank">Extending the IBW Biocompilation Interface with SBOL and SBML Import/Export Capabilities</a><br />
<a href="https://peterdun.wordpress.com/" target="_blank">Peter's blog</a>
<br>Mentored by Harold Fellerman</dd>
<dt><b>Edoardo Galimberti</b> - University of Turin, Turin, Italy</dt>
<dd><a href="https://github.com/nrnb/gsoc2017edoardo_galimberti" target="_blank">cyTRON: a Cytoscape app for the visualization of evolutionary trajectories in cancer progression</a><br />
<a href="https://github.com/BIMIB-DISCo/cyTRON/blob/master/README.md" target="_blank">Edoardo's report</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Raghav Jajodia</b> - Indian Institute of Engineering Science and Technology, Shibpur, India</dt>
<dd><b>Adding support for PSIMI-TAB format to the Disease Variant Impact (DV-IMPACT) Database</b><br />
<a href="https://github.com/nrnb/gsoc2017raghav_jajodia_1" target="_blank">Raghav's GitHub 1</a> /
<a href="https://github.com/nrnb/gsoc2017raghav_jajodia_2" target="_blank">Raghav's GitHub 2</a><br />
<a href="http://jajodiaraghav.github.io/gsoc/" target="_blank">Raghav's blog</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Saurabh Kumar</b> - Indian Institute of Technology Delhi, New Dehli, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017saurabh_kumar" target="_blank">libGPML library to read and write GPML files</a>
<br>Mentored by Martina Summer-Kutmon</dd>
<dt><b>Sandeep Mahapatra</b> - College of Engineering and Technology, Bhubaneswar, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017sandeep_mahapatra" target="_blank">Implementation of a Python Library for GraphSpace RESTful APIs</a><br/>
<a href="https://summerofcode17.wordpress.com/" target="_blank">Sandeep's blog</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt><b>Melvin Mathew</b> - University of Southern California, Los Angeles, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2016mriduls__gsoc2017melvin_mathew" target="_blank">Notification system for GraphSpace</a><br />
<a href="https://melvingsoc.blogspot.com/" target="_blank">Melvin's blog</a>
<br>Mentored by Mitch Wagner</dd>
<dt><b>Bhavesh Narra</b> - BITS Pilani, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017bhavesh_narra" target="_blank">Roadmap to create a WebApp for the Enrichment Map Using Cytoscape and RESTful services</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Ilkin Safarli</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2017_ilkin_safarli" target="_blank">Improvements in Tool for Curating Biological Maps in SBGN</a>
<br>Mentored by Alexander Mazein</dd>
<dt><b>Rishabh Sethi</b> - Indian Institute of Technology, Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017rishabh_sethi" target="_blank">Cytoscape app for GraphSpace</a><br />
<a href="https://rishabhsethi.com/blog/2017/08/26/google-summer-of-code-final-report/" target="_blank">Rishabh's blog</a>
<br>Mentored by T.M Murali</dd>
<dt><b>Jacob Windsor</b> - Maastricht University, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2017pathway_presenter" target="_blank">WikiPathways Pathway Presenter</a><br />
<a href="http://jcbwndsr.com/" target="_blank">Jacob's blog</a>
<br>Mentored by Egon Willighagen</dd>
<dt><b>Michael Wrana</b> - Royal St. George’s College, Toronto, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2017mwrana" target="_blank">PiType: A Protein Interaction Prediction Cytoscape App</a>
<br>Mentored by Florian Goebels</dd>
<dt><b>Guodong Xu</b> - Wuhan University of Technology, Wuhan, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2017guodong_xu_1" target="_blank">Implement GeneMANIA in Julia for High-performance Computing</a>
<br>Mentored by Shradda Pai</dd>
<dt><b>Takahiro Yamada</b> - Keio University, Tokyo, Japan</dt>
<dd><a href="https://github.com/nrnb/gsoc2017takahiro_yamada" target="_blank">Develop a web service which provides simulation / steady state analysis / parameter estimation with SBML models</a><br />
<a href="http://gsoc2017developwebservice.blogspot.jp/" target="_blank">Takahiro's blog</a>
<br>Mentored by Kaito Li</dd>
<dt><b>Haoran Yu</b> - University of British Columbia, Vancouver, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2017haoran_yu" target="_blank">Interconversion of the SBML and SBGN Modelling Languages using Semantics of Logic</a><br />
<a href="http://haleyyew-gsoc.blogspot.ca/" target="_blank">Haoran's blog</a>
<br>Mentored by Nicolas Rodriguez</dd>
<dt><b>Long Zhang</b> - Chengdu University of Information Technology, Chendu, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2017long_zhang" target="_blank">Developing a web interface for DoMo-Pred</a><br />
<a href="https://gist.github.com/ankanch/2fd83be30010470a15a08a603ad3a19a" target="_blank">Long's report</a>
<br>Mentored by Shobhit Jain</dd>
<dt><b>Menghe Zhang</b> - University of California San Diego, San Diego, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2017menghe_zhang" target="_blank">OpenGL-accelerated Renderer for Cytoscape 3</a><br />
<a href="https://mez071.wixsite.com/2017gsoc" target="_blank">Menghe's blog</a>
<br>Mentored by Barry Demchak</dd>
<dt><b>Zach Zundel</b> - University of Utah, Salt Lake City, US</dt>
<dd><b>Develop a Synthetic Biology Publication Workflow that Leverages the Synthetic Biology Open Language</b><br />
<a href="https://github.com/nrnb/gsoc2017zach_zundel_1" target="_blank">Zach's GitHub 1</a><br />
<a href="https://github.com/nrnb/gsoc2017zach_zundel_2" target="_blank">Zach's GitHub 2</a><br />
<a href="https://medium.com/sbol-workflows/latest" target="_blank">Zach's blog</a>
<br>Mentored by Neil Wipat</dd>
</dl>
<p class="text-success">2016 (15/15 passing students, 100%) </p>
<dl>
<dt><b>Supun Arunoda</b> - University of Moratuwa, Galle, Sri Lanka</dt>
<dd><a href="https://github.com/nrnb/gsoc2016supun" target="_blank">Principal Coordinate Analysis and t-Distributed Stochastic Neighbor Embedding in clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2016istemi" target="_blank">Visualizing genomic alterations in TCGA cancer pathways in cBioPortal</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia</dt>
<dd><a href="https://github.com/nrnb/gsoc2016ibestvina" target="_blank">Multithread Centiscape</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Hovakim Grabski</b> - Russian Armenian University, Yerevan, Armenia</dt>
<dd><a href="https://github.com/nrnb/gsoc2016hovakim" target="_blank">Java support for Deviser, a code generation system for SBML libraries</a>
<br><a href="http://hgrabski.blogspot.de">Hovakim's blog</a>
<br>Mentored by Frank T. Bergmann</dd>
<dt><b>Julia Gustavsen</b> - University of British Columbia, Vancouver, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2016joolia" target="_blank">Enhance vignettes and plugin use for R package RCy3 for network manipulation using Cytoscape</a>
<br><a href="http://blog.lunean.com/2016/08/05/extending-rcy3-vignettes-google-summer-of-code-project/">Julia's blog</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Kaito Ii</b> - Keio University Graduate School of Science and Technology, Tokyo, Japan</dt>
<dd><a href="https://github.com/nrnb/gsoc2016kaito" target="_blank">Interconvertible Layout program for CellDesigner</a>
<br><a href="http://kaitoii.blogspot.jp/">Kaito's blog</a>
<br>Mentored by Akira Funahashi</dd>
<dt><b>Devesh Khandelwal</b> - University of Delhi, Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2016devkhan" target="_blank">SBGN-ML and SBML to Escher Converter</a>
<br><a href="https://github.com/devkhan/EscherConverter/wiki">Devesh's blog</a>
<br>Mentored by Zachary A. King</dd>
<dt><b>Miles Mee</b> - McMaster University, Hamilton, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2016miles" target="_blank">The Online Resource for Interface Based Interaction Networks (TOR-IBIN) Web Interface</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Tramy Nguyen</b> - University of Utah, Salt Lake City, UT, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2016roman_tramy" target="_blank">Interconversion between the systems biology modeling formats SBML and BioPAX</a>
<br><a href="http://www.async.ece.utah.edu/~tramyn/gsoc/">Tramy's blog</a>
<br>Mentored by Mike Hucka</dd>
<dt><b>Roman Schulte</b> - Eberhard Karls University, Tübingen, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2016roman_tramy" target="_blank">JSBML Validation System</a>
<br><a href="http://romanschulte.blogspot.de">Roman's blog</a>
<br>Mentored by Andreas Dräger</dd>
<dt><b>Mridul Seth</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2016mriduls" target="_blank">Import graphs in multiple formats and Cytoscape files into GraphSpace</a>
<br>Mentored by TM Murali</dd>
<dt><b>Metin Can Siper</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2016metin" target="_blank">Improving Web Based SBGN Editor SBGNViz.js</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Joseph Stahl</b> - Vanderbuilt University, Nasville, TN, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2016joseph" target="_blank">Tutorials for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt><b>Ashish Tiwari</b> - Arizona State University, Tempe, AZ, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2016ashish" target="_blank">Cytoscape command line scripting enhancements</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Zhaoyuan Zoe Xi</b> - University of California Los Angeles, Los Angeles, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2016zoe" target="_blank">Extending Cytoscape.js: Addition of Clustering Algorithms</a>
<br>Mentored by Mike Kucera</dd>
</dl>
<p class="text-success">2015 (3/4 passing students, 75%), <a href="http://www.nrnb.org/alumni.html#nrnb-tab">2015 NRNB Academy Summer Session</a></p>
<p class="text-success">2014 (17/18 passing students, 94%)</p>
<dl>
<dt><b>Ankit Agarwal</b> - Manipal University, Manipal, India </dt>
<dd><a href="https://github.com/nrnb/gsoc2014ankit" target="_blank">Virtual Cell iPhone App Enhancements</a>
<br>Mentored by Jim Schaff</dd>
<dt><b>Arman Aksoy</b> - Memorial Sloan-Kettering Cancer Center, New York, NY, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2014arman" target="_blank">Pathway Database Converters for the Expansion of Pathway Commons</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Srikanth Bezawada</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014srikanth" target="_blank">Implementing TieDIE algorithm as a Cytoscape App</a>
<br>Mentored by Evan Paull</dd>
<dt><b>Alex Crits-Christoph</b> - Johns Hopkins University, Baltimore, MD, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2014alex" target="_blank">Developing An Interface For The Cancer Network Altering Variant Database</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Kirtan Dave</b> - Sardar Patel University, Vallabh Vidyanagar, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014kirtan" target="_blank">New Features for Interference App</a>
<br>Mentored by Cristian Munteanu</dd>
<dt><b>Shaik Faizaan</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014shaik" target="_blank">Porting Interference App to Cytoscape 3</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Gerardo Huck</b> - National University of Rosario, Rosario, Argentina</dt>
<dd><a href="https://github.com/nrnb/gsoc2014gerardo" target="_blank">Graph Analysis Algorithms for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt><b>Jonathan Melius</b> - University of Maastricht, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2014jonathan" target="_blank">Connect PathVisio and WikiPathways to Expression Atlas</a>
<br>Mentored by Lars Eijssen</dd>
<dt><b>Jimmy Morzaria</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014jimmy2" target="_blank">Network Analysis Enhancements</a>
<br>Mentored by Jason Montojo</dd>
<dt><b>Lilit Nersisyan</b> - National Academy of Sciences of the Republic of Armenia, Yerevan, Armenia</dt>
<dd><a href="https://github.com/nrnb/gsoc2014lilit" target="_blank">PSFC: a Cytoscape app for calculating pathway signal flows</a>
<br>Mentored by Graham Johnson</dd>
<dt><b>Niranjan Padmanabhan</b> - McGill University, Montreal, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2014niranjan" target="_blank">ADAM Variation Services and Visualizations for Cytoscape 3 Variation App</a>
<br>Mentored by Michael Heuer</dd>
<dt><b>Sakshi Pratap</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014sakshi" target="_blank">Porting Pesca App to Cytoscape 3 with new features</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Rohan Saxena</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2014rohan2" target="_blank">PathVisio Plugin to Load Additional Information about Data Nodes</a>
<br>Mentored by Martina Kutmon</dd>
<dt><b>Adam Shaw</b> - University of Chicago, Chicago, IL, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2014adam" target="_blank">Hierarchical Models in Segway</a>
<br>Mentored by Michael Hoffman</dd>
<dt><b>Georg Summer</b> - Maastricht University and TNO, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2014george" target="_blank">Connecting Neo4j and Cytoscape</a>
<br>Mentored by Barry Demchak</dd>
<dt><b>Abhiraj Tomar</b> - University of Southern California, Los Angeles, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2014abhiraj" target="_blank">Implementation of new clustering techniques into Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Truhin Alexandr</b> - Technical University of Moldova, Chisinau, Moldova</dt>
<dd><a href="https://github.com/nrnb/gsoc2014truhin" target="_blank">Pathvisiojs Diff Viewer</a>
<br>Mentored by Anders Riutta</dd>
</dl>
<p class="text-success">2013 (14/15 passing students, 94%)</p>
<dl>
<dt><b>Ankit Agarwal</b> - Manipal University, Manipal, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013ankit" target="_blank">iPhone application for viewing of public/private results in the Virtual Cell</a>
<br>Mentored by Jim Schaff</dd>
<dt><b>Truhin Alexandr</b> - Technical University of Moldova, Chisinau, Moldova</dt>
<dd><a href="https://github.com/nrnb/gsoc2013truhin" target="_blank">Bird's eye view pan control for Cytoscape.js</a>
<br>Mentored by Christian Lopes</dd>
<dt><b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2013istemi" target="_blank">Specialized Layout Algorithm for SBGN Process Description Diagrams</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Shaik Faizaan</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013faizaan" target="_blank">CentiScaPe Development and addition of extra Centrality parameter called Eigenvector Centrality</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Sri Harsha</b> - Keshav Memorial Institute of Technology, Hyderabad, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013sriharsha" target="_blank">SBML Importer Plugin for PathVisio</a>
<br>Mentored by Anwesha Dutta</dd>
<dt><b>Gerardo Huck</b> - National University of Rosario, Rosario, Argentina</dt>
<dd><a href="https://github.com/nrnb/gsoc2013gerardo" target="_blank">Compound Graph Layout Algorithm for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt><b>Ritisha Laungani</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013ritisha" target="_blank">Modeling and Visualizing Cell Signaling Networks with SigViz</a>
<br>Mentored by Graham Johnson</dd>
<dt><b>Christ Leemans</b> - University of Maastricht, Maastricht, The Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2013christ" target="_blank">Automated pathway-creation plugin for PathVisio</a>
<br>Mentored by Andra Waagmeester</dd>
<dt><b>Alvin Leung</b> - McGill University, Montreal, Canada</dt>
<dd><a href="https://github.com/nrnb/gsoc2013alvin" target="_blank">Implementing a Cytoscape 3.0 app for the HyperModules algorithm</a>
<br>Mentored by Gary Bader</dd>
<dt><b>Diego Magagna</b> - Verona University, Veneto, Italy</dt>
<dd><a href="https://github.com/nrnb/gsoc2013diego" target="_blank">Multiplication of nodes and directed graphs in Cytoscape 3</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Jimmy Morzaria</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013jimmy" target="_blank">Visualization of Dynamic Graphs in Cytoscape</a>
<br>Mentored by Jason Montojo</dd>
<dt><b>Sravanthi Sinha</b> - Keshav Memorial Institute of Technology, Hyderabad, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2013sravanthi" target="_blank">WikiPathways client plugin for PathVisio</a>
<br>Mentored by Martina Kutmon</dd>
<dt><b>Abhiraj Tomar</b> - Birla Institute of Technology and Sciences, Pilani, India </dt>
<dd><a href="https://github.com/nrnb/gsoc2013abhiraj" target="_blank">Implementation of Fuzzy Clusters in Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Li Zhang</b> - Jilin University, Changchun, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2013li" target="_blank">Identifier Mapping App for Cytoscape 3.0</a>
<br>Mentored by Chao Zhang</dd>
</dl>
<p class="text-success">2012 (16/16 passing students, 100%)</p>
<dl>
<dt><b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey</dt>
<dd>SBGN-Complaint Views for Cancer Genomics Networks
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Khushi Chachcha</b> - University of British Columbia, Vancouver, Canada</dt>
<dd>GeneMANIA plugin for MedSavant
<br>Mentored by Marc Fiume</dd>
<dt><b>Neil Dhruva</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd>Data summary of tables in Cytoscape
<br>Mentored by Samad Lotia</dd>
<dt><b>Yue Dong</b> - University of Toronto, Toronto, Canada</dt>
<dd>Cytoscape App Manager, Cytoscape Web WebGL Renderer and Layouts, Presentation API Testing
<br>Mentored by Jason Montojo</dd>
<dt><b>Anwesha Dutta</b> - University of Maastricht, Maastricht, The Netherlands</dt>
<dd>Extend PathVisio with a plugin to create , modify and visualize data on biological pathways from scripting languages
<br>Mentored by Martina Kutmon</dd>
<dt><b>Rianne Fijten</b> - University of Maastricht, Maastricht, The Netherlands</dt>
<dd>Plugin for metabolite information in Pathvisio
<br>Mentored by Egon Willighagen</dd>
<dt><b>Jake Fried</b> - University of Maryland, College Park, MD, USA</dt>
<dd>Understanding Complex Pathways using User Data and Web Services in PathVisio
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Dazhi Jiao</b> - Indiana University, Bloomington, IN, USA
</dt>
<dd>Cytoscape Plugin for importing cancer genomic data and
drug-target interaction data from cBio Cancer Genomic Portal
<br>Mentored by Arman Aksoy</dd>
<dt>
<b>Michael Kirby</b> - University of California, San Diego, CA,
USA
</dt>
<dd>A Direct Interface Between R and Cytoscape
<br>Mentored by Mike Smoot</dd>
<dt>
<b>Praveen Kumar</b> - Jawaharlal Nehru Technological University,
Hyderabad, India
</dt>
<dd>Pathway Comparison in PathVisio
<br>Mentored by Martina Kutmon</dd>
<dt>
<b>Ritisha Laungani</b> - Birla Institute of Technology and Science,
Pilani, India
</dt>
<dd>Interactive path explorer through networks and biological
pathways for Cytoscape
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Sabina Sara Pfister</b> - University of Zurich, Zurich,
Switzerland
</dt>
<dd>Loading and visualization of dynamical networks in
Cytoscape 3.0
<br>Mentored by John Brown</dd>
<dt>
<b>David Shih</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Porting HOPACH cluster algorithm into clusterMaker
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Sinan Sonlu</b> - Bilkent University, Ankara, Turkey
</dt>
<dd>Layout Algorithms for New Cytoscape Web
<br>Mentored by Uğur Doğrusöz</dd>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, Missouri
</dt>
<dd>Ontology-based Network Visualization and Analysis
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Yigang Zhou</b> - Wuhan University, Wuhan, China
</dt>
<dd>Visualizing Semantic Data Landscapes with Cytoscape 3.0
<br>Mentored by Andra Waagmeester</dd>
</dl>
<p class="text-success">2011 (8/10 passing students, 80%)</p>
<dl>
<dt>
<b>Andrew Brook</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Integrate Pathway Visualization and Analysis into Savant
<br>Mentored by Marc Fiume</dd>
<dt>
<b>Kumar Chandan</b> - Keshav Memorial Institute of Technology
(KMIT), Hyderabad, India
</dt>
<dd>Real-time Validation Framework for Pathvisio
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Yue Dong</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Cytoscape Web - HTML5 Prototype
<br>Mentored by Jason Montojo</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario,
Argentina
</dt>
<dd>Connecting Cytoscape with igraph
<br>Mentored by Gang Su</dd>
<dt>
<b>Martina Kutmon</b> - University of Maastricht, Maastricht, The
Netherlands
</dt>
<dd>New PathVisio Plug-in Manager
<br>Mentored by Martijn van Iersel</dd>
<dt>
<b>Avinash Thummala</b> - IIIT-H, Hyderabad, India
</dt>
<dd>A Cytoscape build with a fused (Annotation + Basic) editor
based on an improved CyNetworkView with Neo4j interoperability
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Marek Zaluski </b> - Concordia University, Montreal, Canada
</dt>
<dd>HTML5 prototype for Cytoscape Web
<br>Mentored by Christian Lopes</dd>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, MO, USA
</dt>
<dd>GOLayout: Network partitioning and layout driven by GO
ontology
<br>Mentored by Alexander Pico</dd>
</dl>
<p class="text-success">2010 (10/10 passing students, 100%)</p>
<dl>
<dt>
<b>Chetan Bansal</b> - Birla Institute of Technology and Science
Pilani, Goa, Hyderabad, India
</dt>
<dd>Exploring relations between pathways on WikiPathways
<br>Mentored by Thomas Kelder</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario,
Argentina
</dt>
<dd>Improving Cytoscape's Labels Experience
<br>Mentored by Mike Smoot</dd>
<dt>
<b>Dazhi Jiao</b> - Indiana University, Bloomington, IN, USA
</dt>
<dd>Expression Data Reader plugin for Cytoscape
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Bing Liu</b> - National University of Singapore, Singapore,
Singapore
</dt>
<dd>Improve the PathVisio User Interface
<br>Mentored by Kristina Hanspers</dd>
<dt>
<b>Kozo Nishida</b> - Nara Institute of Science and Technology,
Nara, Japan
</dt>
<dd>KEGG global map browser and its integration to Processing
visualizer
<br>Mentored by Keiichiro Ono</dd>
<dt>
<b>Layla Oesper</b> - University of Wisconsin, Madison, WI, USA
</dt>
<dd>Using NLP Techniques to Create a Semantic Network Summary
for Cytoscape
<br>Mentored by Ruth Isserlin</dd>
<dt>
<b>Leontius Pradhana</b> - National University of Singapore,
Singapore, Singapore
</dt>
<dd>Reactome-Wikipathways Round-trip Format Converter
<br>Mentored by Guanming Wu</dd>
<dt>
<b>Anurag Sharma</b> - KIIT University, Bhubaneswar, Bhubaneswar,
India
</dt>
<dd>Perform Microarray Summarization and Alternative Splicing
Analyses By Coupling the Programs AltAnalyze and GenMAPP-CS
<br>Mentored by Nathan Salomonis</dd>
<dt>
<b>Avinash Thummala</b> - IIIT-H, Hyderabad, India
</dt>
<dd>Creating a CyAnnotator and improving CyAnimator
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Tomithy Too</b> - National University of Singapore, Singapore,
Singapore
</dt>
<dd>Proposal for the Implementation of Edge-Weighted Force
Directed layout for Cytoscapeweb
<br>Mentored by Christian Lopes</dd>
</dl>
<p class="text-success">2009 (9/10 passing students, 90%)</p>
<dl>
<dt>
<b>Chetan Bansal </b> - Birla Institute of Technology and Science
Pilani, Goa, Hyderabad, India
</dt>
<dd>Ontologies for Wiki Pathways
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Chinmoy Bhatiya </b> - Denison University, Granville, OH, USA
</dt>
<dd>Phylogenetic tree plugin for Cytoscape
<br>Mentored by Pen-Liang Wang</dd>
<dt>
<b>Adem Bilican </b> - University of Maastricht, Maastricht, The
Netherlands
</dt>
<dd>Biopax plugin(import, layout, export) for PathVisio
<br>Mentored by Martijn van Iersel</dd>
<dt>
<b>Stephen Federowicz</b> - UCSC, Santa Cruz, CA, USA
</dt>
<dd>CyAnimator: A general purpose animation tool for Cytoscape
<br>Mentored by Scooter Morris</dd>
<dt>