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showcase-expression.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>NRNB: Cytoscape Expression Showcase</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
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</head>
<body>
<div class="belt white">
<div class="container">
<h3>Basic Expression Analysis in Cytoscape</h3>
<p>This showcase describes how to visualize gene expression data
on networks in Cytoscape. After importing the data and loading a
network, a custom network visualization is created by mapping visual
attributes to the data and filtering the network based on the data.</p>
<p>
<a
href="http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Basic_Expression_Analysis_in_Cytoscape"
target="_blank"> Detailed tutorial</a>
</p>
<h4>Load the network</h4>
<img src="images/Gal_filtered_loaded.png" alt="" /> <br /> <br />
<h4>Load expression data</h4>
<img src="images/Loadgalexp2.png" alt="" /> <br /> <br />
<h4>Visualize the expression data</h4>
<img src="images/galfiltered-visualization.png" alt="" /> <br />
<br />
<h4>Filter network based on interaction type.</h4>
<img src="images/Filter_panel.png" alt="" /> <img
src="images/Final_network.png" alt="" /> <br /> <br />
<h4>Create sub-networks from interesting regions of the network</h4>
<img src="images/Final_subnetwork.png" alt="" />
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