From 8ec578196b8fb1b9d1edeb229a0dace8a80ad6ae Mon Sep 17 00:00:00 2001 From: Avik Basu <3485425+ab93@users.noreply.github.com> Date: Tue, 19 Sep 2023 15:54:26 -0700 Subject: [PATCH] chore: upgrade pynumaflow version to v0.5 (#291) - upgrade pynumaflow version - improve test coverage - downgrade moto library to fix test failures --------- Signed-off-by: Avik Basu --- numalogic/udfs/_base.py | 2 +- numalogic/udfs/factory.py | 88 +++++- numalogic/udfs/inference.py | 2 +- numalogic/udfs/postprocess.py | 2 +- numalogic/udfs/preprocess.py | 2 +- numalogic/udfs/trainer.py | 2 +- poetry.lock | 475 ++++++++++++++++----------------- pyproject.toml | 6 +- tests/udfs/test_factory.py | 37 +++ tests/udfs/test_inference.py | 3 +- tests/udfs/test_numaflow.py | 5 +- tests/udfs/test_postprocess.py | 5 +- tests/udfs/test_preprocess.py | 3 +- tests/udfs/test_trainer.py | 3 +- tests/udfs/utility.py | 3 +- 15 files changed, 355 insertions(+), 283 deletions(-) create mode 100644 tests/udfs/test_factory.py diff --git a/numalogic/udfs/_base.py b/numalogic/udfs/_base.py index fd121ab6..86622173 100644 --- a/numalogic/udfs/_base.py +++ b/numalogic/udfs/_base.py @@ -12,7 +12,7 @@ from typing import Union from collections.abc import Coroutine import numpy.typing as npt -from pynumaflow.function import Datum, Messages +from pynumaflow.mapper import Datum, Messages from numalogic.tools.types import artifact_t diff --git a/numalogic/udfs/factory.py b/numalogic/udfs/factory.py index 056e4689..42bee724 100644 --- a/numalogic/udfs/factory.py +++ b/numalogic/udfs/factory.py @@ -1,12 +1,24 @@ +# Copyright 2022 The Numaproj Authors. +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# http://www.apache.org/licenses/LICENSE-2.0 +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + import logging from typing import ClassVar +from pynumaflow.mapper import Mapper, MultiProcMapper, AsyncMapper + from numalogic.udfs import NumalogicUDF from numalogic.udfs.inference import InferenceUDF -from numalogic.udfs.trainer import TrainerUDF -from numalogic.udfs.preprocess import PreprocessUDF from numalogic.udfs.postprocess import PostprocessUDF -from pynumaflow.function import Server, AsyncServer, MultiProcServer +from numalogic.udfs.preprocess import PreprocessUDF +from numalogic.udfs.trainer import TrainerUDF _LOGGER = logging.getLogger(__name__) @@ -14,7 +26,7 @@ class UDFFactory: """Factory class to fetch the right UDF.""" - _UDF_MAP: ClassVar[dict] = { + _UDF_MAP: ClassVar[dict[str, type[NumalogicUDF]]] = { "preprocess": PreprocessUDF, "inference": InferenceUDF, "postprocess": PostprocessUDF, @@ -23,6 +35,21 @@ class UDFFactory: @classmethod def get_udf_cls(cls, udf_name: str) -> type[NumalogicUDF]: + """ + Get the UDF class. + + Args: + udf_name: Name of the UDF; + possible values: preprocess, inference, postprocess, trainer + + Returns + ------- + UDF class + + Raises + ------ + ValueError: If the UDF name is invalid + """ try: return cls._UDF_MAP[udf_name] except KeyError as err: @@ -32,21 +59,51 @@ def get_udf_cls(cls, udf_name: str) -> type[NumalogicUDF]: @classmethod def get_udf_instance(cls, udf_name: str, **kwargs) -> NumalogicUDF: + """ + Get the UDF instance. + + Args: + udf_name: Name of the UDF; + possible values: preprocess, inference, postprocess, trainer + + Returns + ------- + UDF instance + + Raises + ------ + ValueError: If the UDF name is invalid + """ udf_cls = cls.get_udf_cls(udf_name) return udf_cls(**kwargs) class ServerFactory: - """Factory class to fetch the right pynumaflow function server.""" + """Factory class to fetch the right pynumaflow function server/mapper.""" _SERVER_MAP: ClassVar[dict] = { - "sync": Server, - "async": AsyncServer, - "multiproc": MultiProcServer, + "sync": Mapper, + "async": AsyncMapper, + "multiproc": MultiProcMapper, } @classmethod def get_server_cls(cls, server_name: str): + """ + Get the server class. + + Args: + server_name: Name of the server; + possible values: sync, async, multiproc + + Returns + ------- + Server class + + Raises + ------ + ValueError: If the server name is invalid + """ try: return cls._SERVER_MAP[server_name] except KeyError as err: @@ -56,5 +113,20 @@ def get_server_cls(cls, server_name: str): @classmethod def get_server_instance(cls, server_name: str, **kwargs): + """ + Get the server/mapper instance. + + Args: + server_name: Name of the server; + possible values: sync, async, multiproc + + Returns + ------- + Server instance + + Raises + ------ + ValueError: If the server name is invalid + """ server_cls = cls.get_server_cls(server_name) return server_cls(**kwargs) diff --git a/numalogic/udfs/inference.py b/numalogic/udfs/inference.py index 285ca539..af7f0354 100644 --- a/numalogic/udfs/inference.py +++ b/numalogic/udfs/inference.py @@ -8,7 +8,7 @@ import torch from numpy import typing as npt from orjson import orjson -from pynumaflow.function import Messages, Datum, Message +from pynumaflow.mapper import Messages, Datum, Message from numalogic.config import RegistryFactory from numalogic.registry import LocalLRUCache, ArtifactData diff --git a/numalogic/udfs/postprocess.py b/numalogic/udfs/postprocess.py index f365039b..fd5d17d4 100644 --- a/numalogic/udfs/postprocess.py +++ b/numalogic/udfs/postprocess.py @@ -7,7 +7,7 @@ import numpy as np from numpy.typing import NDArray from orjson import orjson -from pynumaflow.function import Messages, Datum, Message +from pynumaflow.mapper import Messages, Datum, Message from numalogic.config import PostprocessFactory, RegistryFactory from numalogic.registry import LocalLRUCache diff --git a/numalogic/udfs/preprocess.py b/numalogic/udfs/preprocess.py index 1b0e3dd5..835d7792 100644 --- a/numalogic/udfs/preprocess.py +++ b/numalogic/udfs/preprocess.py @@ -6,7 +6,7 @@ import orjson from numpy._typing import NDArray -from pynumaflow.function import Datum, Messages, Message +from pynumaflow.mapper import Datum, Messages, Message from sklearn.pipeline import make_pipeline from numalogic.config import PreprocessFactory, RegistryFactory diff --git a/numalogic/udfs/trainer.py b/numalogic/udfs/trainer.py index 29ab27b4..e402fb2e 100644 --- a/numalogic/udfs/trainer.py +++ b/numalogic/udfs/trainer.py @@ -7,7 +7,7 @@ import numpy.typing as npt import orjson import pandas as pd -from pynumaflow.function import Datum, Messages, Message +from pynumaflow.mapper import Datum, Messages, Message from sklearn.pipeline import make_pipeline from torch.utils.data import DataLoader diff --git a/poetry.lock b/poetry.lock index 2ec60308..b2325a47 100644 --- a/poetry.lock +++ b/poetry.lock @@ 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[[package]] @@ -4732,13 +4703,13 @@ files = [ [[package]] name = "typing-extensions" -version = "4.7.1" -description = "Backported and Experimental Type Hints for Python 3.7+" +version = "4.8.0" +description = "Backported and Experimental Type Hints for Python 3.8+" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"}, - {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"}, + {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"}, + {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"}, ] [[package]] @@ -4983,17 +4954,17 @@ multidict = ">=4.0" [[package]] name = "zipp" -version = "3.16.2" +version = "3.17.0" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.8" files = [ - {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"}, - {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"}, + {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, + {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] [extras] @@ -5005,4 +4976,4 @@ redis = ["redis"] [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.12" -content-hash = "abcfdf1c496915cc32f58d90aa82892c956789bc55c045a814481445ab3f4f65" +content-hash = "e6dc92afc9c94728593c1914045a4cf1938e7a343e5a4b0896acda87181e949e" diff --git a/pyproject.toml b/pyproject.toml index c907e947..bcedc2af 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "numalogic" -version = "0.6.0a1" +version = "0.6.0a2" description = "Collection of operational Machine Learning models and tools." authors = ["Numalogic Developers"] packages = [{ include = "numalogic" }] @@ -36,7 +36,7 @@ cachetools = "^5.3.0" orjson = "^3.9.5" typer = {version = "^0.9", extras = ["rich"]} matplotlib = "^3.4.2" -pynumaflow = "~0.4" +pynumaflow = "~0.5" # extras @@ -70,7 +70,7 @@ pre-commit = "^3.3.1" fakeredis = "^2.11.2" freezegun = "^1.2.2" pympler = "^1.0.1" -moto = "^4.0.1" +moto = "~4.1" [tool.poetry.group.jupyter] optional = true diff --git a/tests/udfs/test_factory.py b/tests/udfs/test_factory.py new file mode 100644 index 00000000..17cefb74 --- /dev/null +++ b/tests/udfs/test_factory.py @@ -0,0 +1,37 @@ +import unittest + +from fakeredis import FakeRedis, FakeServer + +from numalogic.udfs import UDFFactory, ServerFactory + + +class TestUDFFactory(unittest.TestCase): + def test_get_cls(self): + udf_cls = UDFFactory.get_udf_cls("inference") + self.assertEqual(udf_cls.__name__, "InferenceUDF") + + def test_get_cls_err(self): + with self.assertRaises(ValueError): + UDFFactory.get_udf_cls("some_udf") + + def test_get_instance(self): + udf = UDFFactory.get_udf_instance("preprocess", r_client=FakeRedis(server=FakeServer())) + self.assertIsInstance(udf, UDFFactory.get_udf_cls("preprocess")) + + +class TestServerFactory(unittest.TestCase): + def test_get_cls(self): + server_cls = ServerFactory.get_server_cls("sync") + self.assertEqual(server_cls.__name__, "Mapper") + + def test_get_cls_err(self): + with self.assertRaises(ValueError): + ServerFactory.get_server_cls("some_server") + + def test_get_instance(self): + server = ServerFactory.get_server_instance("multiproc", handler=lambda x: x) + self.assertIsInstance(server, ServerFactory.get_server_cls("multiproc")) + + +if __name__ == "__main__": + unittest.main() diff --git a/tests/udfs/test_inference.py b/tests/udfs/test_inference.py index feab6b7a..b5588c4c 100644 --- a/tests/udfs/test_inference.py +++ b/tests/udfs/test_inference.py @@ -6,7 +6,7 @@ from fakeredis import FakeServer, FakeStrictRedis from freezegun import freeze_time from orjson import orjson -from pynumaflow.function import Datum, DatumMetadata +from pynumaflow.mapper import Datum from numalogic.config import NumalogicConf, ModelInfo, TrainerConf, LightningTrainerConf from numalogic.models.autoencoder.variants import VanillaAE @@ -20,7 +20,6 @@ DATUM_KW = { "event_time": datetime.now(), "watermark": datetime.now(), - "metadata": DatumMetadata("1", 1), } DATA = { "uuid": "dd7dfb43-532b-49a3-906e-f78f82ad9c4b", diff --git a/tests/udfs/test_numaflow.py b/tests/udfs/test_numaflow.py index 9eba47b7..88cf0ab7 100644 --- a/tests/udfs/test_numaflow.py +++ b/tests/udfs/test_numaflow.py @@ -2,8 +2,7 @@ from datetime import datetime import numpy.typing as npt -from pynumaflow.function import Datum, Messages, Message -from pynumaflow.function._dtypes import DatumMetadata +from pynumaflow.mapper import Datum, Messages, Message from numalogic.tools.types import artifact_t from numalogic.udfs import NumalogicUDF @@ -42,7 +41,6 @@ def setUp(self) -> None: value=b"100", event_time=datetime.now(), watermark=datetime.now(), - metadata=DatumMetadata("1", 0), ) def test_exec(self): @@ -68,7 +66,6 @@ def setUp(self) -> None: value=b"100", event_time=datetime.now(), watermark=datetime.now(), - metadata=DatumMetadata("1", 0), ) async def test_aexec(self): diff --git a/tests/udfs/test_postprocess.py b/tests/udfs/test_postprocess.py index 4df25ca7..9c3e88f6 100644 --- a/tests/udfs/test_postprocess.py +++ b/tests/udfs/test_postprocess.py @@ -9,13 +9,13 @@ from fakeredis import FakeServer, FakeStrictRedis from omegaconf import OmegaConf from orjson import orjson -from pynumaflow.function import DatumMetadata, Datum +from pynumaflow.mapper import Datum from numalogic._constants import TESTS_DIR from numalogic.models.threshold import StdDevThreshold from numalogic.registry import RedisRegistry, LocalLRUCache from numalogic.tools.exceptions import ModelKeyNotFound -from numalogic.udfs._config import PipelineConf +from numalogic.udfs import PipelineConf from numalogic.udfs.entities import Header, TrainerPayload, Status from numalogic.udfs.postprocess import PostprocessUDF @@ -25,7 +25,6 @@ DATUM_KW = { "event_time": datetime.now(), "watermark": datetime.now(), - "metadata": DatumMetadata("1", 1), } DATA = { "uuid": "dd7dfb43-532b-49a3-906e-f78f82ad9c4b", diff --git a/tests/udfs/test_preprocess.py b/tests/udfs/test_preprocess.py index 487bf524..f1fb879b 100644 --- a/tests/udfs/test_preprocess.py +++ b/tests/udfs/test_preprocess.py @@ -7,7 +7,7 @@ from fakeredis import FakeServer, FakeStrictRedis from omegaconf import OmegaConf from orjson import orjson -from pynumaflow.function import Datum, DatumMetadata +from pynumaflow.mapper import Datum from numalogic._constants import TESTS_DIR from numalogic.registry import RedisRegistry @@ -25,7 +25,6 @@ DATUM_KW = { "event_time": datetime.now(), "watermark": datetime.now(), - "metadata": DatumMetadata("1", 1), } diff --git a/tests/udfs/test_trainer.py b/tests/udfs/test_trainer.py index 828fc6bb..60509cb3 100644 --- a/tests/udfs/test_trainer.py +++ b/tests/udfs/test_trainer.py @@ -8,7 +8,7 @@ from fakeredis import FakeStrictRedis, FakeServer from omegaconf import OmegaConf from orjson import orjson -from pynumaflow.function import Datum, DatumMetadata +from pynumaflow.mapper import Datum from numalogic._constants import TESTS_DIR from numalogic.config import NumalogicConf, ModelInfo @@ -47,7 +47,6 @@ def setUp(self): value=orjson.dumps(payload), event_time=datetime.now(), watermark=datetime.now(), - metadata=DatumMetadata("1", 1), ) conf = OmegaConf.load(os.path.join(TESTS_DIR, "udfs", "resources", "_config.yaml")) schema = OmegaConf.structured(PipelineConf) diff --git a/tests/udfs/utility.py b/tests/udfs/utility.py index bb7da059..eef54857 100644 --- a/tests/udfs/utility.py +++ b/tests/udfs/utility.py @@ -2,7 +2,7 @@ import json import numpy as np -from pynumaflow.function import Datum, DatumMetadata +from pynumaflow.mapper import Datum from sklearn.pipeline import make_pipeline from numalogic.config import PreprocessFactory @@ -31,7 +31,6 @@ def input_json_from_file(data_path: str) -> Datum: value=data, event_time=datetime.datetime.now(), watermark=datetime.datetime.now(), - metadata=DatumMetadata(msg_id="", num_delivered=0), )