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data-sets.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/obi/dev/modules/data-sets.owl#"
xml:base="http://purl.obolibrary.org/obo/obi/dev/modules/data-sets.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/obi/dev/modules/data-sets.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000100"/>
<!-- http://purl.obolibrary.org/obo/OBI_0002985 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002985"/>
<!-- http://purl.obolibrary.org/obo/OBI_0003327 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003327">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>The output produced by a digital imaging technique, such as microscopy, MRI, or CT.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A data set that is comprised of multidimensional structured measurements and metadata required for a morphological representation of an entity. An image data set can be the source from which an image (such as a 2D image using pixels or a 3D image using voxels) is produced.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-7245-3450 "Lauren M. Wishnie"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-9821-4132 "Mackenzie T. Smith"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003328 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003328">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003327"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003329"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000112>The DICOM file produced by an MRI machine when a multiple sclerosis patient undergoes a brain scan.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An image data set whose information content originates from some MR imaging assay and is about some MRI participant.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-7245-3450 "Lauren M. Wishnie"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-9821-4132 "Mackenzie T. Smith"</obo:IAO_0000117>
<obo:IAO_0000119>MRI at a Glance, ISBN 10: 1119053552</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003329 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003329"/>
<!-- http://purl.obolibrary.org/obo/OBI_0003331 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003331">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003327"/>
<obo:IAO_0000112>The untransformed ("k-space") data produced by an MRI machine, prior to mathematical transformation into a form that corresponds to the anatomical structure of the brain.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An image data set that encodes measurement values produced by some instrument before undergoing a data transformation.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-1604-3078 "Alan Ruttenberg"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-7245-3450 "Lauren M. Wishnie"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-9821-4132 "Mackenzie T. Smith"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>raw image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003333 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003333">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003327"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
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</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000112>The production of JPEG file by a digital camera.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An image data set that is the output of an image data set analysis.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-1604-3078 "Alan Ruttenberg"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-7245-3450 "Lauren M. Wishnie"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-9821-4132 "Mackenzie T. Smith"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>computed image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003334 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003334">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
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<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
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</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000112>The product of a mathematical transformation of raw "k-space" data produced by an MRI machine into a form that represents the anatomical structure of the brain.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An image data set that is the direct output of a raw magnetic resonance image data set reconstruction or a transformation of another MR image data set.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-7245-3450 "Lauren M. Wishnie"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-9821-4132 "Mackenzie T. Smith"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>reconstructed magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003335 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003335">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003334"/>
<obo:IAO_0000112>MRI used for assessing structural integrity of brain axons and visualizing ischemia.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A type of magnetic resonance image data set collected using at least three diffusion gradients of some factor "b," which is a function of the amplitude, duration, and interval of the gradiants.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>diffusion weighted magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003336 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003336">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003334"/>
<obo:IAO_0000112>MRI used for assessing brain activity via blood oxygen level dependent signal.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An magnetic resonance image data set collected as a 4D time series representing changes in brain metabolism (i.e. BOLD), typically used as a proxy for brain activity.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9625-1899 "William D. Duncan"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>functional magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003337 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003337">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<obo:IAO_0000112>An fMRI used for assessing functional connectivity of brain regions at rest.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A type of functional MRI in which the participant is not given a task, but just rests during acquisision</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>resting state functional magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003338 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003338">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<obo:IAO_0000112>fMRI type used for assessing brain activity while performing an action or in response to stimuli.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A type of functional MRI in which the participant is given a task or tasks, which are timed with the acquisition</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>task-based functional magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003339 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003339">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003334"/>
<obo:IAO_0000112>MRI used for evaluating ischemia.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An magnetic resonance image data set that captures volume and flow of blood in the brain.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>perfusion weighted magnetic resonance image data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003340 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003340">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003334"/>
<obo:IAO_0000112>MRI used for visualizing structure of tissue.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An magnetic resonance image data set in which the contrast emphasizes density of protons, supressing T1 and T2 effects</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl"</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra"</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<!-- http://purl.obolibrary.org/obo/OBI_0003341 -->
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<!-- http://purl.obolibrary.org/obo/OBI_0003342 -->
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<!-- http://purl.obolibrary.org/obo/OBI_0003343 -->
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<!-- http://purl.obolibrary.org/obo/OBI_0003344 -->
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<!-- http://purl.obolibrary.org/obo/OBI_0003345 -->
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<!-- http://purl.obolibrary.org/obo/OBI_0003346 -->
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<!-- http://purl.obolibrary.org/obo/OBI_0003347 -->
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<!-- http://purl.obolibrary.org/obo/OBI_0003348 -->
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<!-- http://purl.obolibrary.org/obo/OBI_0003350 -->
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<obo:IAO_0000118>T2 weighted TSE magnetic resonance image data set</obo:IAO_0000118>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
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<rdfs:label>T2 FLAIR lesion mask</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/UBERON_0000955 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000955"/>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->