Merge pull request #1731 from obi-ontology/ntr_1711

Adds Illumina NextSeq 1000 device (and fixes minor error)
obi-ontology · Sep 20, 2023 · 3885cd2 · 3885cd2
2 parents 278a1cb + badcad3
commit 3885cd2
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diff --git a/src/ontology/modules/devices.owl b/src/ontology/modules/devices.owl
@@ -9088,6 +9088,20 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0003550 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003550">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002926"/>
+        <obo:IAO_0000115>A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.</obo:IAO_0000115>
+        <obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
+        <obo:IAO_0000118>human odour baited light trap</obo:IAO_0000118>
+        <obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
+        <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1654</obo:IAO_0000233>
+        <rdfs:label>odor baited CDC light trap</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBI_0003551 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003551">
@@ -9098,19 +9112,26 @@
         <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1651</obo:IAO_0000233>
         <rdfs:label>resting clay pot trap</rdfs:label>
     </owl:Class>
+
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0003606 -->
 
-    <!-- http://purl.obolibrary.org/obo/OBI_0003550 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003550">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002926"/>
-        <obo:IAO_0000115>A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.</obo:IAO_0000115>
-        <obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
-        <obo:IAO_0000118>human odour baited light trap</obo:IAO_0000118>
-        <obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
-        <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1654</obo:IAO_0000233>
-        <rdfs:label>odor baited CDC light trap</rdfs:label>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003606">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0400103"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000304"/>
+                <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/OBI_0000759"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115>A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells.</obo:IAO_0000115>
+        <obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
+        <obo:IAO_0000118>NextSeq 1000</obo:IAO_0000118>
+        <obo:IAO_0000119>https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html</obo:IAO_0000119>
+        <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1711</obo:IAO_0000233>
+        <obo:IAO_0000234>GENEPIO</obo:IAO_0000234>
+        <rdfs:label>Illumina NextSeq 1000</rdfs:label>
     </owl:Class>
 
 

diff --git a/src/ontology/templates/devices.tsv b/src/ontology/templates/devices.tsv
@@ -467,6 +467,7 @@ OBI:0003493	SD Bioline Chikungunya IgM capture ELISA kit				An assay kit that is
 OBI:0003494	Advantage Chikungunya IgM Card kit				An assay kit that is manufactured by J. Mitra to detect human IgM antibodies for Chikungunya virus with a protein microarray and double-antigen sandwich ELISA.			John Judkins ORCID:0000-0001-6595-0902						assay kit				'J. Mitra'	('capable of' some 'microarray ELISA measuring Chikungunya IgM antibody')
 OBI:0003550	odor baited CDC light trap			human odour baited light trap	A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.	VEuPathDB		John Judkins ORCID:0000-0001-6595-0902				https://github.com/obi-ontology/obi/issues/1654		Centers for Disease Control and Prevention light trap					
 OBI:0003551	resting clay pot trap			resting clay pot catch	A resting arthropod trap that consists of a container composed primarily of clay.			John Judkins ORCID:0000-0001-6595-0902				https://github.com/obi-ontology/obi/issues/1651		resting arthropod trap					
+OBI:0003606	Illumina NextSeq 1000			NextSeq 1000	A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells.	https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html		Sebastian Duesing			GENEPIO	https://github.com/obi-ontology/obi/issues/1711	subclass	DNA sequencer				Illumina	
 OBI:0400005	A10-Analyzer	A10-Analyzer	ready for release		A A10 is a flow_cytometer_analyser manufactured by Apogee. It uses an arc lamp as a light source, with choices of 75W Xe, 75W Xe/Hg or 100W Hg arc lamps. It has filters and collectors for up to three fluorescent parameters and two scatter parameters. It uses analog electronics. The A10 can be used for measuring the properties of individual cells.	http://www.apogeeflow.com/flow_cytometry_products.htm		John Quinn						flow cytometer analyzer					
 OBI:0400006	A40-MiniFCM	A40-MiniFCM	ready for release		A A40-MiniFCM is a flow_cytometer_analyser that allows for the choice of one of four lasers (375nm, 405nm,488nm, 532nm, 635nm), and PMTs and filters for collecting up to four parameters. It uses digital electronics. A military version of this cytometer is available as well. The A40-MiniFCM is geared towards the most demanding applications such as archaea, bacteria and large virus.	http://www.apogeeflow.com/flow_cytometry_products.htm		John Quinn						flow cytometer analyzer					
 OBI:0400007	analog-to-digital converter	analog-to-digital converter	metadata incomplete	A2D|A-D	An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal.	http://en.wiktionary.org/wiki/Analog-to-Digital_Converter	The analog to digital converter transformed the analog output from the photomultiplier tube to a digital signal for collection.	John Quinn|Melanie Courtot						device	signal conversion function