Merge pull request #1795 from obi-ontology/1794_add_language_tags

Add language tags
obi-ontology · Jul 15, 2024 · 858b69b · 858b69b
2 parents 943179e + 360cfe7
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diff --git a/src/ontology/modules/administration.owl b/src/ontology/modules/administration.owl
diff --git a/src/ontology/modules/antibody-purification.owl b/src/ontology/modules/antibody-purification.owl
diff --git a/src/ontology/modules/biobank-specimens.owl b/src/ontology/modules/biobank-specimens.owl
diff --git a/src/ontology/modules/biopsy.owl b/src/ontology/modules/biopsy.owl
@@ -146,7 +146,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>Biopsy of a potentially cancerous mole.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
         <obo:IAO_0000119>https://en.wikipedia.org/wiki/Biopsy</obo:IAO_0000119>
@@ -161,7 +161,7 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
         <obo:IAO_0000112>Image-guided needle biopsy allows a doctor to biopsy suspicious areas that aren&apos;t readily seen or felt through skin, such as in a prostate gland.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy which uses an imaging procedure to guide a needle biopsy.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy which uses an imaging procedure to guide a needle biopsy.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>image guided needle biopsy</obo:IAO_0000118>
         <obo:IAO_0000118>image-guided biopsy</obo:IAO_0000118>
@@ -184,7 +184,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A CT Guided Biopsy is a procedure performed by a radiologist to obtain a small tissue sample through a needle.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A needle biopsy guided by real-time computed tomography (CT) scan images.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A needle biopsy guided by real-time computed tomography (CT) scan images.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>CT Assisted Biopsy</obo:IAO_0000118>
         <obo:IAO_0000118>CT Guided Biopsy</obo:IAO_0000118>
@@ -202,7 +202,7 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002651"/>
         <obo:IAO_0000112>An ultrasound-guided needle biopsy uses sound waves to help locate a nodule or abnormality within the thyroid.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A needle biopsy guided by ultrasound visualization.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A needle biopsy guided by ultrasound visualization.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000119>https://www.oncolink.org/cancer-treatment/procedures-diagnostic-tests/biopsy-procedures/ultrasound-guided-needle-biopsy</obo:IAO_0000119>
         <rdfs:label>ultrasound-guided needle biopsy</rdfs:label>
@@ -222,7 +222,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A needle biopsy is often used on suspicious breast lumps and enlarged lymph nodes that a doctor can feel through a patient&apos;s skin.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy that uses a hollow needle to extract cells.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy that uses a hollow needle to extract cells.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000119>https://www.mayoclinic.org/tests-procedures/needle-biopsy/about/pac-20394749</obo:IAO_0000119>
         <rdfs:label>needle biopsy</rdfs:label>
@@ -236,7 +236,7 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
         <obo:IAO_0000112>A fine needle aspiration biopsy is commonly performed in order to test for cancer.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy that uses a thin needle to extract cells.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy that uses a thin needle to extract cells.</obo:IAO_0000115>
         <obo:IAO_0000117>Chris Stoeckert, Helena Ellis, Jie Zheng</obo:IAO_0000117>
         <obo:IAO_0000118>FNA</obo:IAO_0000118>
         <obo:IAO_0000118>FNAB</obo:IAO_0000118>
@@ -253,7 +253,7 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
         <obo:IAO_0000112>A core needle biopsy can remove more tissue than a fine needle biopsy, and therefore can provide more information about the cells and tissue removed.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy that uses a hollow tube to collect a core of tissue.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy that uses a hollow tube to collect a core of tissue.</obo:IAO_0000115>
         <obo:IAO_0000117>Chris Stoeckert, Helena Ellis, Jie Zheng</obo:IAO_0000117>
         <obo:IAO_0000118>CNB</obo:IAO_0000118>
         <obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769667/</obo:IAO_0000119>
@@ -269,7 +269,7 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002650"/>
         <obo:IAO_0000112>Surgical biopsy may be required to collect hard-to-reach tissue.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy involving a surgical incision into an organism to access the biopsy material.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy involving a surgical incision into an organism to access the biopsy material.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>excisional biopsy</obo:IAO_0000118>
         <obo:IAO_0000118>open biopsy</obo:IAO_0000118>
@@ -291,7 +291,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>The makeup of fat in the abdominal wall can be investigated by fat biopsy.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy involving the collection of a small part of the abdominal wall fat pad.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy involving the collection of a small part of the abdominal wall fat pad.</obo:IAO_0000115>
         <obo:IAO_0000117>Nicole Vasilevsky, Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>abdominal wall biopsy</obo:IAO_0000118>
         <obo:IAO_0000118>fat biopsy</obo:IAO_0000118>
@@ -313,7 +313,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A mouse tail biopsy was performed to collect material for DNA extraction.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy involving the collection of the tip of a mamallian tail.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy involving the collection of the tip of a mamallian tail.</obo:IAO_0000115>
         <obo:IAO_0000117>Nicole Vasilevsky, Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>snip</obo:IAO_0000118>
         <obo:IAO_0000119>http://web.jhu.edu/animalcare/policies/Tail%20Biopsy%20of%20Mice.pdf</obo:IAO_0000119>
@@ -334,7 +334,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A bone marrow biopsy removes bone with the marrow inside to look at under a microscope</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy where a small amount of bone and a small amount of fluid and bone marrow are collected.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy where a small amount of bone and a small amount of fluid and bone marrow are collected.</obo:IAO_0000115>
         <obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
         <obo:IAO_0000119>http://www.webmd.com/cancer/bone-marrow-aspiration-and-biopsy</obo:IAO_0000119>
         <rdfs:label>bone marrow biopsy</rdfs:label>
@@ -354,7 +354,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A three or four millimeter punch is used in s skinpunch biopsy proceedure.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy that involves the collection of a cylinder of skin (including epidermis, dermis and superficial fat) using a punch tool.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy that involves the collection of a cylinder of skin (including epidermis, dermis and superficial fat) using a punch tool.</obo:IAO_0000115>
         <obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
         <obo:IAO_0000118>punch biopsy; skin biopsy</obo:IAO_0000118>
         <obo:IAO_0000119>http://healthlibrary.epnet.com/GetContent.aspx?token=b93d114e-5009-4f6a-9917-6c594254fcc7&amp;chunkiid=14861</obo:IAO_0000119>
@@ -381,7 +381,7 @@
         </rdfs:subClassOf>
         <obo:IAO_0000112>A vacuum assisted biopsy can remove an area of abnormal cells from breast tissue.</obo:IAO_0000112>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <obo:IAO_0000115>A biopsy performed with a needle augmented with a vacuum device.</obo:IAO_0000115>
+        <obo:IAO_0000115 xml:lang="en">A biopsy performed with a needle augmented with a vacuum device.</obo:IAO_0000115>
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <obo:IAO_0000118>VAB</obo:IAO_0000118>
         <obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769667/</obo:IAO_0000119>