Edit label of OBI:0003660

obi-ontology · Jul 18, 2024 · a29d3b5 · a29d3b5
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diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl
@@ -26658,13 +26658,13 @@
                 </owl:someValuesFrom>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000111>in vitro CRISPR screen using single RNA-Seq</obo:IAO_0000111>
+        <obo:IAO_0000111>in vitro CRISPR screen using single-cell RNA-seq</obo:IAO_0000111>
         <obo:IAO_0000115>An in vitro CRISPR screening assay that uses single cell RNA-Seq to detect induced changes in gene expression</obo:IAO_0000115>
         <obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
         <obo:IAO_0000117>Jennifer Jou</obo:IAO_0000117>
         <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1784</obo:IAO_0000233>
         <obo:IAO_0000234>Jennifer Jou</obo:IAO_0000234>
-        <rdfs:label>in vitro CRISPR screen using single RNA-Seq</rdfs:label>
+        <rdfs:label>in vitro CRISPR screen using single-cell RNA-seq</rdfs:label>
     </owl:Class>
 
 

diff --git a/src/ontology/templates/assays.tsv b/src/ontology/templates/assays.tsv
@@ -657,7 +657,7 @@ OBI:0003601	quartz crystal microbalance assay	quartz crystal microbalance assay
 OBI:0003604	multiplexed error-robust fluorescence in situ hybridization assay			MERFISH	A fluorescence in-situ hybridization assay that uses combinatorial FISH labeling with error resistant encoding schemes for highly multiplexed single-molecule imaging.	https://en.wikipedia.org/wiki/Fluorescence_in_situ_hybridization#MERFISH		Sebastian Duesing			Brain Image Library	https://github.com/obi-ontology/obi/issues/1724	subclass		fluorescence in-situ hybridization assay														
 OBI:0003605	single molecule fluorescence in situ hybridization			smFISH	A fluorescence in-situ hybridization assay that detects single RNA molecules in fixed cells, allowing for both the quantification and localization at the single-cell level and single-molecule resolution.	https://doi.org/10.21769/BioProtoc.3070		Sebastian Duesing			Brain Image Library	https://github.com/obi-ontology/obi/issues/1725	subclass		fluorescence in-situ hybridization assay														
 OBI:0003659	in vitro CRISPR screening assay	in vitro CRISPR screening assay			An assay in which cells expressing a Cas system are infected with a library of guide RNAs with the intent of causing a perturbation at the target of the guide RNAs.			Jennifer Jou|Bjoern Peters			Jennifer Jou	https://github.com/obi-ontology/obi/issues/1784	subclass		assay	cas mediated mutagenesis	assay	cell											
-OBI:0003660	in vitro CRISPR screen using single RNA-Seq	in vitro CRISPR screen using single RNA-Seq			An in vitro CRISPR screening assay that uses single cell RNA-Seq to detect induced changes in gene expression			Jennifer Jou|Bjoern Peters			Jennifer Jou	https://github.com/obi-ontology/obi/issues/1784	subclass		in vitro CRISPR screening assay		single-cell RNA sequencing assay												
+OBI:0003660	in vitro CRISPR screen using single-cell RNA-seq	in vitro CRISPR screen using single-cell RNA-seq			An in vitro CRISPR screening assay that uses single cell RNA-Seq to detect induced changes in gene expression			Jennifer Jou|Bjoern Peters			Jennifer Jou	https://github.com/obi-ontology/obi/issues/1784	subclass		in vitro CRISPR screening assay		single-cell RNA sequencing assay												
 OBI:0003661	in vitro CRISPR perturbation screen using FISH and flow cytometry	in vitro CRISPR perturbation screen using FISH and flow cytometry			An in vitro CRISPR screening assay that uses single FISH and flow cytometry to detect induced changes in gene expression of the targeted genes			Jennifer Jou|Bjoern Peters			Jennifer Jou	https://github.com/obi-ontology/obi/issues/1784	subclass		in vitro CRISPR screening assay		flow cytometry assay|fluorescence in-situ hybridization assay												
 OBI:0302736	comet assay		ready for release	single cell gel electrophoresis assay|SCGE assay	An assay that measures DNA damage (DNA breakage) in eucaryotic cells exposed to a challenge by determining the size and shape of DNA migration by detecting fluorescently labeled DNA from a cell placed in an electric field using gel electrophoresis	PMID:7686265	PMID: 18326531.Mutagenesis. 2008 Mar 6.Recommendations for design of the rat comet assay.	Philippe Rocca-Serra					subclass		assay		fluorescence microscopy assay	cell				('material entity' and ('has role' some 'dye role') and ('bearer of' some fluorescence))		agarose gel	information content entity	cellular response to DNA damage stimulus			
 OBI:0302737	PCR-SSCP assay		ready for release	polymerase chain reaction-single strand conformation polymorphism assay	An assay that identifies DNA sequence variation (mutation, deletion, insertions) in target DNA sequences amplified using polymerase chain reaction using gel electrophoresis and denaturating conditions	PMID:18219595	PMID: 17334176.Hum Exp Toxicol. 2007 Jan;26(1):9-18.Is there a role for PCR-SSCP among the methods for missense mutation detection of TP53 gene?	Philippe Rocca-Serra					subclass		genotyping assay	polymerase chain reaction|material component separation								amplified DNA	(image and 'genotype information')